View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_low_14 (Length: 255)
Name: NF19869_low_14
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34818840 - 34818605
Alignment:
| Q |
1 |
gcaacgtttcatgcaaccattggtgacattactatgcagttatagttctagacatgtcaaacttaagtgatatgttgactttacattaaatatatataat |
100 |
Q |
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| T |
34818840 |
gcaacgtttcatgcaaccattggtgacattactatgcagttatagttctggacatgtcaaacttaagtgatatgttgactttacattaaatatatataat |
34818741 |
T |
|
| Q |
101 |
tcaaggcaatgtaatcaatgagtacatttannnnnnnggtcacatagtcctttccaccggaattgtaatcctatttgaattttgaagcataattgtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34818740 |
tcaaggcaatgtaatcaatgagtacatttatttttttggtcatatagtcctttccaccggaattgtgatcctatttgaattttgaagcataattgtaatt |
34818641 |
T |
|
| Q |
201 |
cagatgctaaaattggacatatgtctctggcgtaat |
236 |
Q |
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|||||||||||||||||||| |||||| |||||||| |
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| T |
34818640 |
cagatgctaaaattggacatctgtctccggcgtaat |
34818605 |
T |
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