View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_low_2 (Length: 562)
Name: NF19869_low_2
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 545
Target Start/End: Original strand, 27602946 - 27603481
Alignment:
| Q |
10 |
attattctatgttgcttcaaccctagaaatcaaatattccctatattgtttcatcattttcatttgattggatactttcaattcgattttgtggcttttt |
109 |
Q |
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| T |
27602946 |
attattctatgttgcttcaaccctagaaatcaaatattccctatattgtttcatcattttcatttgattggatactttcaattcgattttgtgacttttt |
27603045 |
T |
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| Q |
110 |
tcttctctcagaattctgttttggttaagagaatggcgtcggctttgatttcttgcatttcgcggagatttctgaagcctagtctcctttcttctggctt |
209 |
Q |
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| T |
27603046 |
tattctctcagaattctgttttggttaagagaatggcgtcggctttgatttctcgcgcttggcggagatttctcaagcctagtctcctttcttctggctt |
27603145 |
T |
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| Q |
210 |
caccccttcaatcttcaaccccttgatttcctctcaacagtgtgtagaccgataccccagtcctaatgtttcagtcagtccattcaagccatcccaattt |
309 |
Q |
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| T |
27603146 |
caccccttcaatcttcaaccccttgatttcctctcaacagtgtgtagaccgataccccagtcctaatgtttcagtcagtccattcaagccatcccaattt |
27603245 |
T |
|
| Q |
310 |
gggatttataatcttgaattttgtagaagtgttgggtcactctcaaatttccaacttgttgtgcacatctctacgtcgccttcgagattaggacaagata |
409 |
Q |
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| T |
27603246 |
gtgatttataatcttgaattttgtagaagtgttgggtcactctcaaatttccaacttgttgtgcacatctctacctcgccttcgagattaggacaagata |
27603345 |
T |
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| Q |
410 |
aggaaaacaagaatcagagtagtagcaatgtgagtagtggaggggacatctcttgggttgacttgtacttgcctaggttggttcagccctatgctcggct |
509 |
Q |
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| T |
27603346 |
aggaaaacaagaatcagagtagtagcaatgtgagtagtggaggggacatctcttgggttgacttgtacttgcctaggttggttcagccctatgctcggct |
27603445 |
T |
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| Q |
510 |
tgctcgccttgataaaccaattggaacatggcttct |
545 |
Q |
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| T |
27603446 |
tgctcgccttgataaaccaattggaacatggcttct |
27603481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 263 - 545
Target Start/End: Complemental strand, 52211155 - 52210873
Alignment:
| Q |
263 |
accccagtcctaatgtttcagtcagtccattcaagccatcccaatttgggatttataatcttgaattttgtagaagtgttgggtcactctcaaatttcca |
362 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
52211155 |
accccggttctaatgtttcagtcagtccattcaagccatcccaatttggggtttataatcttgaaaattgtaaaagtgttggctcactctcaaatttcca |
52211056 |
T |
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| Q |
363 |
acttgttgtgcacatctctacgtcgccttcgagattaggacaagataaggaaaacaagaatcagagtagtagcaatgtgagtagtggaggggacatctct |
462 |
Q |
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| T |
52211055 |
acttgttgtgcacatctctacgtcgccttcgagattaggaaatgataaggaaaacaagaatgcgaatagttgcaatgtgagtagtgtagaggacatctct |
52210956 |
T |
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| Q |
463 |
tgggttgacttgtacttgcctaggttggttcagccctatgctcggcttgctcgccttgataaaccaattggaacatggcttct |
545 |
Q |
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| T |
52210955 |
tgggttgacttgtacttgcctaggttggttcagccttatgcccggcttgctcgcctcgataaaccaattgggacatggcttct |
52210873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 52211245 - 52211151
Alignment:
| Q |
137 |
agagaatggcgtcggctttgatttcttgcatttcgcggagatttctgaagcctagtctcctttcttctggcttcaccccttcaatcttcaacccc |
231 |
Q |
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| T |
52211245 |
agagaatgccggcagctttgatttcttgcgattcgcggaggtttctcaagcctactctcctttcttctggcttctcaccttcaattttcaacccc |
52211151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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