View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_low_3 (Length: 497)
Name: NF19869_low_3
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 40942216 - 40942709
Alignment:
| Q |
1 |
tagatcattgcttgtggaaggacatgttctttttcattccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtctatgttgcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942216 |
tagatcattgcttgtggaaggacatgttctttttccttccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtctatgttgcat |
40942315 |
T |
|
| Q |
101 |
gaacattccaaaacttatgggcatctgtcatgttcatattcaatataacatttttattcatacttctacctttttcacattgtagctatacttttatcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942316 |
gaacattccaaaacttatgggcatctgtcatgttcatattcaatataacatttttattcatacttctacctttttcacattgtagctatacttttatcgt |
40942415 |
T |
|
| Q |
201 |
ttaggaaattcatcacccatcacctccctttaaaatagtcttgcaaccttgacacccaaaaaaccacagcaaaggatagcatactttgatcctcttagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40942416 |
ttaggaaattcatcacccatcacctccctttaaaatagtcttgcaatcttgacacccaaaaaaccacagcaaaggatatcatactttgatcctcttagtg |
40942515 |
T |
|
| Q |
301 |
cagtttannnnnnnaatggcttgatgccctttcgatttgcagtgtgacaagttagacaagctcttggttttattatctcaatcaatcatgcagatacttc |
400 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942516 |
cagtttattttgttaatggcttgatgccctttcgatttgcaatgtgacaagttagacaagctcttggttttattatctcaatcaatcatgcagatacttc |
40942615 |
T |
|
| Q |
401 |
ccacttatggtggtctattaaagatcctttggatcagaggttttgtttcattgaatgttggaacaaacttatccttattcacgatattcttcga |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
40942616 |
ccacttatggtggtctattaaagatcctttggatcagaggttttgtttcattgaatgttggaacaaacttgtccttattcacgattttgttcga |
40942709 |
T |
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