View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19869_low_5 (Length: 435)
Name: NF19869_low_5
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19869_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 146 - 416
Target Start/End: Complemental strand, 26902248 - 26901978
Alignment:
| Q |
146 |
cattcggattcgggtcggatcctacatttctcgaaccgtcaccggaatcctccacaaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
245 |
Q |
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| T |
26902248 |
cattcggattcgggtcggatcctacatttcttgaaccatcaccggaatcctccaccaccgagagaaatgacaggatcactcctcgcaagattcctcctcc |
26902149 |
T |
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| Q |
246 |
gccgatcaccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacatcgtcgccgccgaaccaccggt |
345 |
Q |
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| T |
26902148 |
gtcgatcaccaccgccgcagagccaattcatctttcaacgtggcatttctcagtccgcagcagaaagaaccaaagacaacgtcgccgccgaaccaccggt |
26902049 |
T |
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| Q |
346 |
gcttccaccgttcgattacgttccgccatcgtattccggtccttccggagaccacgttctcgcgaagcgta |
416 |
Q |
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| T |
26902048 |
gcttccaccgttcgattacgttccgccatcgtattccggtccttccggcgaccacgttctcgcgaagcgta |
26901978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26902384 - 26902310
Alignment:
| Q |
10 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26902384 |
acatcatcactcccacacccattccctatataaactcccccattcttctctcatccctccaattccaaatcctga |
26902310 |
T |
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