View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19869_low_7 (Length: 378)

Name: NF19869_low_7
Description: NF19869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19869_low_7
NF19869_low_7
[»] chr2 (9 HSPs)
chr2 (13-361)||(29488128-29488476)
chr2 (42-361)||(30256596-30256917)
chr2 (87-361)||(29502400-29502674)
chr2 (82-361)||(29490294-29490573)
chr2 (206-357)||(29505430-29505581)
chr2 (156-358)||(29511069-29511271)
chr2 (237-358)||(29549084-29549205)
chr2 (146-358)||(29518187-29518399)
chr2 (224-358)||(29535323-29535457)
[»] scaffold0186 (1 HSPs)
scaffold0186 (128-274)||(9211-9357)
[»] chr8 (1 HSPs)
chr8 (128-274)||(18874708-18874854)
[»] chr1 (1 HSPs)
chr1 (242-301)||(49721337-49721396)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 29488128 - 29488476
Alignment:
Q  13 aatatgaaaatgactaactttataaatatctagcactagccagttctcactcgacaacttgggattttttacaatcatggcaaacgaggtaattctgtta 112  Q
    |||||||||| |||  |||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  29488128 aatatgaaaacgacccacttcataaataactagcactagccagttctcactcggcaacttaggattttttacaatcatggcaaacgaggtaattctgtta 29488227  T
Q  113 gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29488228 gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatctcagaaataagagtc 29488327  T
Q  213 ctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacataga 312  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29488328 ctttacttcttcaaatgaacccaattcacaacaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacataga 29488427  T
Q  313 tgaagtttggaatgataaagcttcattcatgccttctgatccttatgag 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29488428 tgaagtttggaatgataaagcttcattcatgccttctgatccttatgag 29488476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 42 - 361
Target Start/End: Complemental strand, 30256917 - 30256596
Alignment:
Q  42 ctagcactagccagttctcactcgacaacttgggattt---tttacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtat 138  Q
    |||||||||| ||||||||||||||| |||| ||||||   ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  30256917 ctagcactagtcagttctcactcgactacttaggatttgtttttacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtat 30256818  T
Q  139 gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30256817 gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttc-aatgaatccaatt 30256719  T
Q  239 cataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcat 338  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30256718 cacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcat 30256619  T
Q  339 tcatgccttctgatccttatgag 361  Q
    ||||| ||||| | |||||||||    
T  30256618 tcatgtcttctcacccttatgag 30256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 87 - 361
Target Start/End: Original strand, 29502400 - 29502674
Alignment:
Q  87 tcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaa 186  Q
    ||||||||||||| ||  ||||||| |||||||||  |||||||||||| |||||||  |  ||||||||||||||||| ||||||||||| ||||  ||    
T  29502400 tcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgcattagctgaaaaaagtgttaaatacgagtgtaa 29502499  T
Q  187 agaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaa 286  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  29502500 agaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaa 29502599  T
Q  287 tctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctgatccttatgag 361  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  29502600 tctgcaatcattgtgcagtacatagatgaagtttggaatgataaagcttcattcatgccctctgatccgtatgag 29502674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 29490294 - 29490573
Alignment:
Q  82 tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag 181  Q
    |||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||| |  ||||||||||||||||||||| | ||| ||||||||    
T  29490294 tacaatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaagggagttcaatatgag 29490393  T
Q  182 tacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccattt 281  Q
    |||||||||||| |||||||| |||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |  |||    
T  29490394 tacaaagaagaaaatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgttt 29490493  T
Q  282 gcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctgatccttatgag 361  Q
    | ||||| || |||||||| || || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29490494 gtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgag 29490573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 357
Target Start/End: Complemental strand, 29505581 - 29505430
Alignment:
Q  206 aagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaat 305  Q
    |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| || ||   || ||||||  |||    
T  29505581 aagagtcctttactcctacaaatgaatccaattcacaagaaaattccagttctaatccataatggcaaatccatttgtgagtcactaaatattgttgaat 29505482  T
Q  306 acatagatgaagtttggaatgataaagcttcattcatgccttctgatcctta 357  Q
    | || ||||| |||||||||||| |  || | ||  ||||||||||||||||    
T  29505481 atattgatgaggtttggaatgatcattctccttttttgccttctgatcctta 29505430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 358
Target Start/End: Complemental strand, 29511271 - 29511069
Alignment:
Q  156 tagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagt 255  Q
    ||||||||||| || | ||  |||||||||||||||||||| | || || ||||| |||||  |  | |||||||| ||  |||||||||| || |||||    
T  29511271 tagctgaaaagggtatcaagcatgagtacaaagaagaagatttaaggaacaagagccctttgttgttacaaatgaaccctgttcataagaaaatcccagt 29511172  T
Q  256 tcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctgatcct 355  Q
    |||||| |||||||| ||||| ||||| ||||||  ||||  ||| ||||| || ||||||||||||||||| ||| || | ||  ||||||||||||||    
T  29511171 tcttattcataatggtaaatcaatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatgagaaatctcctttgttgccttctgatcct 29511072  T
Q  356 tat 358  Q
    |||    
T  29511071 tat 29511069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 29549205 - 29549084
Alignment:
Q  237 ttcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttc 336  Q
    |||| ||||| || || |||||||| |||||||||||| ||||||| ||||||  ||||  ||| ||||| || ||||||||||||||||| ||| || |    
T  29549205 ttcagaagaaaatccctgttcttattcataatggaaaacccatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatgagaaatctcc 29549106  T
Q  337 attcatgccttctgatccttat 358  Q
     ||  |||||||||||||||||    
T  29549105 tttgttgccttctgatccttat 29549084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 29518399 - 29518187
Alignment:
Q  146 agaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataaga 245  Q
    ||||| || |||||||||||| || | ||| ||||||||| |||||||||| | || || || || |||||  |  | |||||||| ||  |||||||||    
T  29518399 agaatagccttagctgaaaagggtatcaaacatgagtacagagaagaagatttaaggaacaaaagccctttgttgttacaaatgaaccctgttcataaga 29518300  T
Q  246 agattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgcc 345  Q
    | || || |||||||| |||||||| ||||| ||||| ||||||  ||||  ||| || || || ||||| ||||||||||| ||| || | ||  ||||    
T  29518299 aaatccctgttcttattcataatggtaaatcaatttgtgaatctttaattgctgttcagtatattgatgaggtttggaatgagaaatctcctttgttgcc 29518200  T
Q  346 ttctgatccttat 358  Q
    |||||||||||||    
T  29518199 ttctgatccttat 29518187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 358
Target Start/End: Complemental strand, 29535457 - 29535323
Alignment:
Q  224 caaatgaatccaattcataagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtgcaatacatagatgaagtttgga 323  Q
    |||||||| || ||||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||  |||   ||| || || || ||||| |||||||    
T  29535457 caaatgaaccctattcacaagaaaatccctgttctaattcataatggtaaatcaatttgtgaatctttaatggctgttcagtatattgatgaggtttgga 29535358  T
Q  324 atgataaagcttcattcatgccttctgatccttat 358  Q
    |||| ||| |||| ||  |||||||||||||||||    
T  29535357 atgagaaatcttctttgttgccttctgatccttat 29535323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 9357 - 9211
Alignment:
Q  128 atgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaa 227  Q
    |||||||||||||||||||| || ||||| ||||||||  |  | || ||||||||||| ||||||||||||  ||| ||||| |   | ||| |  |||    
T  9357 atgtttggtatgagagcaaggatagcattggctgaaaaaggcataaagtatgagtacaaggaagaagatcttgaaaacaagagccaaatgcttttgaaaa 9258  T
Q  228 tgaatccaattcataagaagattccagttcttatccataatggaaaa 274  Q
    |||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  9257 tgaacccaattcacaagaagattcctgttcttatccataagggaaaa 9211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 18874854 - 18874708
Alignment:
Q  128 atgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaa 227  Q
    |||||||||||||||||||| || ||||| ||||||||  |  | || ||||| ||||| ||||||||||||  ||| ||||| |   | ||| |  |||    
T  18874854 atgtttggtatgagagcaaggatagcattggctgaaaaaggcataaagtatgaatacaaggaagaagatcttgaaaacaagagccaaatgcttttgaaaa 18874755  T
Q  228 tgaatccaattcataagaagattccagttcttatccataatggaaaa 274  Q
    |||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  18874754 tgaacccaattcacaagaagattcctgttcttatccataagggaaaa 18874708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 49721337 - 49721396
Alignment:
Q  242 aagaagattccagttcttatccataatggaaaatccatttgcgaatctgcaattattgtg 301  Q
    |||||||| |||||||| ||| ||||||| ||| ||||||| ||||||||||||||||||    
T  49721337 aagaagatcccagttctcatcaataatggcaaacccatttgtgaatctgcaattattgtg 49721396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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