View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_high_6 (Length: 255)
Name: NF1986_high_6
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 42964407 - 42964645
Alignment:
| Q |
17 |
gaagaactgtgaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaatgacacattggggtttgtgaaaggtactcctcctctt |
116 |
Q |
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| T |
42964407 |
gaagaactgtgaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaatgacacattggggtttgtgaaaggtactcctcctctt |
42964506 |
T |
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| Q |
117 |
tcaagcaacaaaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttccaccacctactattatgtagtcataaccatcatttgtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964507 |
tcaagcaacaaaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttccaccacctactattatgtagtcataaccatcatttgtgt |
42964606 |
T |
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| Q |
217 |
tggtggttgaaattgatggtggagatgagaatgaacttg |
255 |
Q |
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| T |
42964607 |
tggtggttgaaattgatggtggagatgagaatgaacttg |
42964645 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 5499623 - 5499447
Alignment:
| Q |
27 |
gaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaatgacacattggggtttgtgaaaggtactcctcctctttcaagcaaca |
126 |
Q |
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||||||||||||||||||| |||||||| ||||| || ||||| |||||||||| ||||| || || |||||||| || || ||||||||||| | | |
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| T |
5499623 |
gaagctgaagttggtgaaaggtctgccaaggtaatatggaagttctcaagaaatgttacatttggattagtgaaaggaacaccacctctttcaagtacta |
5499524 |
T |
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| Q |
127 |
aaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttccaccacctactattatgtagtcataa |
203 |
Q |
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| T |
5499523 |
atacactaaagttttgagataatgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcataa |
5499447 |
T |
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