View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_high_7 (Length: 250)
Name: NF1986_high_7
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_high_7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 6069021 - 6068788
Alignment:
| Q |
17 |
atgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6069021 |
atgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcatttgggattaagttctacttgc |
6068922 |
T |
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| Q |
117 |
aactccggtctaccacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttc |
216 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6068921 |
aactccggtctaccacacctacaaagtcttccgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttc |
6068822 |
T |
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| Q |
217 |
tattaccactcgcttcaatgaaaaaagagaataa |
250 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
6068821 |
tattaccacccgcttcaatgaaaaaagagaataa |
6068788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 6091399 - 6091621
Alignment:
| Q |
30 |
atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct |
127 |
Q |
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||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
6091399 |
atagattatgtaatattctaaaagacttttgtgtcctgtcttggttctttcactaaatacaaaatcactagggattaagttgtacttgcaactccggtct |
6091498 |
T |
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| Q |
128 |
accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattt-tctattaccact |
226 |
Q |
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| T |
6091499 |
acgacacctgcagagcctattgatacacttcgcaaccaaagaagatgggcacatatgttttggacaatcagaatctctaaagcatttatct-ttaccacc |
6091597 |
T |
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| Q |
227 |
cgcttcaatgaaaaaagagaataa |
250 |
Q |
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| T |
6091598 |
cccttcaatgaaaaaagagaataa |
6091621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 6080328 - 6080542
Alignment:
| Q |
30 |
atagattatgtaatattctaaa-actttt-gtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct |
127 |
Q |
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|||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| | ||||| |
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| T |
6080328 |
atagattatgtaatattctaaagactttttgtgcactctcttgactctttcactaaatacaaaatcaattgggattaagtcttacttgcaaccctggtct |
6080427 |
T |
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| Q |
128 |
accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactc |
227 |
Q |
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| T |
6080428 |
aacacacttacaattacttctgagacacttcacgaccaaataggatggacacatattttttggacaatcagaatctctaaaacatcttctattaccaccc |
6080527 |
T |
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| Q |
228 |
gcttcaatgaaaaaa |
242 |
Q |
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|||| ||| |||||| |
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| T |
6080528 |
gctttaataaaaaaa |
6080542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 6113357 - 6113177
Alignment:
| Q |
30 |
atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct |
127 |
Q |
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|||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
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| T |
6113357 |
atagattaggtaatattctaaaagacttttgtgtattctcttggttctttcactaaatacaaaatcacttgggattaagttgtacttgcaaccccggttt |
6113258 |
T |
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| Q |
128 |
accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaa |
208 |
Q |
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| T |
6113257 |
acgacacctgcagtgctttttgaaacacttcgtaaccaaataagatgggcacataacttttggacaatcagaatctctaaa |
6113177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 6120249 - 6120027
Alignment:
| Q |
30 |
atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct |
127 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||| ||||| | |
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| T |
6120249 |
atagattatgtaatattctaaaagacttttgtgtactctcctggttctttcagtaaatacaaaatcacttgggattaagttgtatttgcaatcccggttt |
6120150 |
T |
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| Q |
128 |
accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacat-tttctattaccact |
226 |
Q |
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|| ||| || || || | ||||||||||| | | ||| ||||||| |||||| |||||||||||||||||||| |||| ||| | ||| ||||| |
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| T |
6120149 |
acgacagctgcagagctttttgatacacttcgcaactaaagaagatggacacatatattttggacaatcagaatctttaaagcatctatct-ttaccgtg |
6120051 |
T |
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| Q |
227 |
cgcttcaatgaaaaaagagaataa |
250 |
Q |
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| T |
6120050 |
cccttcaatgaaaaaagagaataa |
6120027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 6073299 - 6073497
Alignment:
| Q |
52 |
acttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtctaccacacctacaaagtctgctgat |
151 |
Q |
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|||||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||| | || |||| ||||||| |||| || ||| | | ||| |
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| T |
6073299 |
acttttgtgtactctcttggttcttgcacaacatacaaaatcacttgggattaggtttttatttgaactacggtctaacacatttataaataccgttgac |
6073398 |
T |
|
| Q |
152 |
acacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactcgcttcaatgaaaaaagagaataa |
250 |
Q |
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|||||||||| |||||||||| || |||||| ||||| ||||||| |||||| |||||||||||| |||| || ||||||||||||||||||||| |
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| T |
6073399 |
acacttcacgaccaaataagacggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccgtttcaatgaaaaaagagaataa |
6073497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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