View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_low_1 (Length: 555)
Name: NF1986_low_1
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2956512 - 2956800
Alignment:
| Q |
1 |
ttgttttagggtatatgtatggcgataacgaccatgatcaaagttgtttttgtacattcgttgattttcacattcggcttgcactctttgtttagaagta |
100 |
Q |
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| T |
2956512 |
ttgttttagggtatatgtatggcgataacgacgatgatcaaagttgttttcgtacattcgttgattttcacattcggcttgcactctttgtttagaagta |
2956611 |
T |
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| Q |
101 |
gagcatttcttgttcgactcatgcctttttcattgttaaggtagaatttcttgtttgtctcttgctctctttttcttggttcatgacccattcattgcta |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2956612 |
gagcatttcttgttcgactcacgcctttttcattgttaaggtagaatttcttgtttgtctcttgctctctttttcttggttcatgacccattcattgcta |
2956711 |
T |
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| Q |
201 |
gggggagaatttcttatttggctcataaccctttatgctgaagtacaaacgaggaaggtgcttgctattcttggtaatggtagggcatc |
289 |
Q |
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| T |
2956712 |
gggggagaatttcttatttggctcataaccctttatgctgaagtacaaacgaggaaggtgcttgctattcttggtaatggtagggcatc |
2956800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 352 - 543
Target Start/End: Original strand, 2956863 - 2957058
Alignment:
| Q |
352 |
gcagaattaatgatgaagtcgttgagttttattttgcagcgcgagttcagatccactaaagtctcccattcccattgttggtttttcttatgtggtt--- |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2956863 |
gcagaattaatgatgaagtcgttgagttttattttgcagcgcgagttcaggtccactaaagtctcccattcccattgttggttgttcttatgtggttggt |
2956962 |
T |
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| Q |
449 |
-tcatcacaagcaaccaaagctatggttgcaagttgtactcattttttgcctcttccctccaacgtacctcctctcctaagcggttcaaaaatatt |
543 |
Q |
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| T |
2956963 |
ttcctcacaagcaaccaaagctatggttgcaagttgtactcattttttgcctcttccctccaacgtacctcctctcctaagcggttcaaaaatatt |
2957058 |
T |
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