View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_low_13 (Length: 236)
Name: NF1986_low_13
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 21260035 - 21260183
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21260035 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgta |
21260134 |
T |
|
| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
149 |
Q |
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| T |
21260135 |
atgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 21264616 - 21264764
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21264616 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgta |
21264715 |
T |
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| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
149 |
Q |
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| T |
21264716 |
atgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6847759 - 6847899
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6847759 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgta |
6847858 |
T |
|
| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatca |
141 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6847859 |
atgtagatttggaaagaaataaaatgagacctactgtatca |
6847899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6843156 - 6843296
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
6843156 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgta |
6843255 |
T |
|
| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatca |
141 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6843256 |
atgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 47805188 - 47805328
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47805188 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgta |
47805287 |
T |
|
| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatca |
141 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47805288 |
atgtagatttggaaagaaataaaatgagacctactgtatca |
47805328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 47800606 - 47800746
Alignment:
| Q |
1 |
atagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47800606 |
atagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgta |
47800705 |
T |
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| Q |
101 |
atgtagatttggaaagaaataaaatgagacctactctatca |
141 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47800706 |
atgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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