View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_low_4 (Length: 368)
Name: NF1986_low_4
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 54634379 - 54634733
Alignment:
| Q |
14 |
tctttttctttcactgccaaaaaacaaaactcacttttcaacattcatttcttcaccattctcttccttcactcttacgctaaatcatttccctccacca |
113 |
Q |
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| T |
54634379 |
tctttttctttcactgccaaaaaacaaaactcacttttcaacattcatttcttcaccattctcttccttcactcttacgctaaatcatttccctccacca |
54634478 |
T |
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| Q |
114 |
tatcaaaattttctcgaatctgaaagcttcttctcggacatggctatgctccgcaagttgttctatcgtaagcctcctgatggtctcctcgagatctgcg |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634479 |
aatcaaaattttctcgaatctgaaagcttcttcgcggacatggctatgctccgcaagttgttctatcgtaagcctcctgatggtctcctcgagatctgcg |
54634578 |
T |
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| Q |
214 |
acagagtttacggtactttctttctcatttttcatttccttcaattacacgtttctcttcaaaaaaccgccaaagtttatttcttcatactattcttctg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634579 |
acagagtttacggtactttctttctcatttttcatttccttcaattacacgcttctcttcaaaaaaccgccaaagtttatttcttcatactattcttctg |
54634678 |
T |
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| Q |
314 |
caattcataattccagcaatattcgtttcattactatctccaaaatgtagatttt |
368 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54634679 |
caattcataattccagcaatattcgtttcattattatctccaaaatgtagatttt |
54634733 |
T |
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