View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1986_low_5 (Length: 362)

Name: NF1986_low_5
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1986_low_5
NF1986_low_5
[»] chr3 (3 HSPs)
chr3 (32-346)||(47737820-47738132)
chr3 (164-244)||(47742208-47742283)
chr3 (78-128)||(47742467-47742517)
[»] chr1 (1 HSPs)
chr1 (9-47)||(10167427-10167465)
[»] chr8 (1 HSPs)
chr8 (9-46)||(3890437-3890474)
[»] chr7 (1 HSPs)
chr7 (9-46)||(18037183-18037220)
[»] chr4 (3 HSPs)
chr4 (9-46)||(25063397-25063434)
chr4 (9-46)||(37219837-37219874)
chr4 (10-46)||(36073284-36073320)
[»] chr6 (1 HSPs)
chr6 (10-46)||(29693652-29693688)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 32 - 346
Target Start/End: Complemental strand, 47738132 - 47737820
Alignment:
Q  32 aaatctttcttgatattccttaatttcttaattcannnnnnnaccgacatatgagaatacaaatccataaatgcaaggtcccagaattacaacaaaa--t 129  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  47738132 aaatctttcttgatattccttaatttcttaattcatttttttaccgacatatgagaatacaaatccataaatgcaaggtcccagaattacaacaaaaaat 47738033  T
Q  130 ttaaatggcaacgcatgtaacccatggatacaattattgcatatattcttttgctagtgtaagaactcattcttccttccttgtatagcgtttgtgtaat 229  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  47738032 ttaaatggcaacccatgtaacccatggatacaattattgcatatatttttttgctagtgtaagaactcattcttcctt----gtatagcgtttgtgtaat 47737937  T
Q  230 atcttgggtttcatactcatataacctttttgcagtataaccttttcgcattcgttgttaatacacttacaaataaaaggatggaagttgaaaatttgtg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47737936 atcttgggtttcatactcatataacctttttgcagtataaccttttcgcattcgttgttaatacacttacaaataaaaggatggaagttgaaaatttgtg 47737837  T
Q  330 gacaatcactatcgtct 346  Q
    |||||||||||||||||    
T  47737836 gacaatcactatcgtct 47737820  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 47742283 - 47742208
Alignment:
Q  164 tattgcatatattcttttgctagtgtaagaactcattcttccttccttgtatagcgtttgtgtaatatcttgggtttcata 244  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    |||| ||| ||||||||||||||||||||||||    
T  47742283 tattgcatatat-cttttgctagtgtaagaacttattcttcctt----gtatggcgcttgtgtaatatcttgggtttcata 47742208  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 47742517 - 47742467
Alignment:
Q  78 acatatgagaatacaaatccataaatgcaaggtcccagaattacaacaaaa 128  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||| ||||    
T  47742517 acatattagaatactaatccataaatgcaaggtcccagcattacaaaaaaa 47742467  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 10167465 - 10167427
Alignment:
Q  9 gattattctaccatatcattcttaaatctttcttgatat 47  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  10167465 gattattctatcatgtcattcttaaatctttcttgatat 10167427  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 3890474 - 3890437
Alignment:
Q  9 gattattctaccatatcattcttaaatctttcttgata 46  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  3890474 gattattctgccatatcattcttgaatctttcttgata 3890437  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 18037183 - 18037220
Alignment:
Q  9 gattattctaccatatcattcttaaatctttcttgata 46  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  18037183 gattattgtaccatgtcattcttaaatctttcttgata 18037220  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 25063434 - 25063397
Alignment:
Q  9 gattattctaccatatcattcttaaatctttcttgata 46  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  25063434 gattattctaccatgtcattcttgaatctttcttgata 25063397  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 37219837 - 37219874
Alignment:
Q  9 gattattctaccatatcattcttaaatctttcttgata 46  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  37219837 gattattctgccatgtcattcttaaatctttcttgata 37219874  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 36073320 - 36073284
Alignment:
Q  10 attattctaccatatcattcttaaatctttcttgata 46  Q
    ||||||||  |||||||||||||||||||||||||||    
T  36073320 attattctggcatatcattcttaaatctttcttgata 36073284  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 29693652 - 29693688
Alignment:
Q  10 attattctaccatatcattcttaaatctttcttgata 46  Q
    |||||||| |||| |||||||||||||||||||||||    
T  29693652 attattctgccatgtcattcttaaatctttcttgata 29693688  T

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