View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1986_low_6 (Length: 318)
Name: NF1986_low_6
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 33647670 - 33647385
Alignment:
| Q |
16 |
acatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgt |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
33647670 |
acatcatctaccccttctagtatcccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagttgctgcaccggttacgat |
33647571 |
T |
|
| Q |
116 |
ttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33647570 |
atgcatcagcggaactaacatctgcagatgcatcaagcagaagtttgacaacctcggcagaagcagcagaacaaccagaaacagcacaacgaagagcggt |
33647471 |
T |
|
| Q |
216 |
agccctatctgagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33647470 |
agccctatctgagccacacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
33647385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 25812488 - 25812206
Alignment:
| Q |
16 |
acatcatctaccccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgt |
115 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||||||| | | |||| |||| |||||||||| ||||||||||||| | ||| | | |
|
|
| T |
25812488 |
acatcatctacgccttctagtatggatcgtagtatcctcttccttgaaccgaatatactactagacaccgagacaatcaagtcgctgcactg-ttatcat |
25812390 |
T |
|
| Q |
116 |
ttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggt |
215 |
Q |
| |
|
| ||||| ||||||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
25812389 |
tcacatcaatggaactaacatctgcagatgcatcaagcgaaaggttgataacttcagcagaagcagcagaacatccagaaacagcacaacgaagagcggt |
25812290 |
T |
|
| Q |
216 |
agccctatctgagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataa |
299 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25812289 |
agccctatctgagccgcacactcggttgacatcaacacgactggttccgagaatataagacaacacacccttgcttccaaataa |
25812206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 294
Target Start/End: Complemental strand, 25818117 - 25817884
Alignment:
| Q |
61 |
gaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagct |
160 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||| ||||||| | |||| ||| | || ||||| | |||| |||||||||| |||||| |||||||| |
|
|
| T |
25818117 |
gaaccggagatactattagacaccgagacaatcaagtcgttacaccagttgtcattctcatcaacaacactaccatctgcagaagcatcaaccaaaagct |
25818018 |
T |
|
| Q |
161 |
tgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctgagccatacactcggttaacatcaacacgaccggt |
260 |
Q |
| |
|
| | || |||||||||||||||||||||||||| ||||| | |||||||||| ||| |||| ||||| ||| | |||| |||||| ||||||||||| |
|
|
| T |
25818017 |
taataatctcggcagaagcagcagaacaaccagtaacagaaaaatgaagagctgtacccctgtctgaaccacaaggtcggctaacattgacacgaccggt |
25817918 |
T |
|
| Q |
261 |
tccgagaatataagacaacacacccttgcttcca |
294 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
25817917 |
tccaagaatataagacaacacacccttgcttcca |
25817884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 30122007 - 30121843
Alignment:
| Q |
110 |
taccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaag |
209 |
Q |
| |
|
||||||| |||||| | | |||| |||| || ||| |||||||||||| ||||| || || || ||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
30122007 |
taccgttggcatcaacagcactagcatccgccgatgcatcaagcaaaatcttgataatcttgggggaagcagcagaacccccaacaaccgcacaatgaag |
30121908 |
T |
|
| Q |
210 |
agcggtagccctatctgagcca-tacactcggttaacatcaacacgaccggttccgagaatataag |
274 |
Q |
| |
|
||| ||||| | ||| || ||| || || || ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
30121907 |
agcagtagcaccatcggatccactagac-cgattaacatcaacccgacctgttccaagaatataag |
30121843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University