View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_low_7 (Length: 317)
Name: NF1986_low_7
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 34320333 - 34320026
Alignment:
| Q |
1 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320333 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
34320234 |
T |
|
| Q |
101 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaattttggtcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34320233 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatactttggaattttggtcact |
34320134 |
T |
|
| Q |
201 |
accctcatttggattgtaaaagaaaatgactggaacatataaacgnnnnnnnntgttatcaatgaaagaaagtggaaaaattctgaggtgagtaggagtt |
300 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34320133 |
acactcatttggattgtaaaagaaaatgactggaacatataaacgaaaaaaaatgttatcaatgaaagaaagtggataaattctgaggtgagtaggagtt |
34320034 |
T |
|
| Q |
301 |
ggtgatga |
308 |
Q |
| |
|
|||||||| |
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|
| T |
34320033 |
ggtgatga |
34320026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 34329241 - 34328934
Alignment:
| Q |
1 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
100 |
Q |
| |
|
||||||||||| | ||| ||| | ||||||| ||| | ||||| ||||||||||||| |||||||| | ||| | ||||||||||||||||||||| | |
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|
| T |
34329241 |
aaagggttcaacaatttttctatagggttttggaggacttctgatagtttgtttttgacatttgtgactagaaacggcacaccttgatcattacattcga |
34329142 |
T |
|
| Q |
101 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaattttggtcact |
200 |
Q |
| |
|
||||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||||||||| || | | |||| | ||| |||||||||||| |
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| T |
34329141 |
cggtaattttatctttcaaccttccagcaaaaggataatatttggataaaagttgagataaagatttacgtaattgtgaaattttgacattttggtcact |
34329042 |
T |
|
| Q |
201 |
accctcatttggattgtaaaagaaaatgactggaacatataaacgnnnnnnnntgttatcaatgaaagaaagtggaaaaattctgaggtgagtaggagtt |
300 |
Q |
| |
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| | | ||||| ||||||||| ||| | ||| ||||| ||| |||| || |||||||||||||| | ||| ||||||||| ||||||| |
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| T |
34329041 |
atctttgtttggtttgtaaaagtaaagtaatggcacatagttacgcatcaaaatgttgtctatgaaagaaagtgggtatattttgaggtgagaaggagtt |
34328942 |
T |
|
| Q |
301 |
ggtgatga |
308 |
Q |
| |
|
|||||||| |
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|
| T |
34328941 |
ggtgatga |
34328934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 34333267 - 34333175
Alignment:
| Q |
72 |
aaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaaga |
164 |
Q |
| |
|
||||||| |||||||||| |||||||| |||| || | |||||| || ||||| ||||| ||||||||| | |||| || |||||||||||| |
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|
| T |
34333267 |
aaatgacgcaccttgatcgttacattcgatggaaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaaga |
34333175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 36622515 - 36622659
Alignment:
| Q |
36 |
aatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaaggg |
135 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||| | |
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| T |
36622515 |
aatctctgaaagtttgttttttacctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatga |
36622614 |
T |
|
| Q |
136 |
tagtatttagataaaagttgagataaagattttcgaagtagtgat |
180 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| ||| ||||| |
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|
| T |
36622615 |
tagtatttagatagaagttgagataaggattttcggagttgtgat |
36622659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 36627717 - 36627913
Alignment:
| Q |
1 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
100 |
Q |
| |
|
||||||||||| | ||| || || || |||| ||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||||| |
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| T |
36627717 |
aaagggttcaacaatttttcagtaggattttgaagaatctctgaaagtttgttttttatctttgtgactaaaaacaacaccccttggtcattacattcaa |
36627816 |
T |
|
| Q |
101 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaattttggtc |
197 |
Q |
| |
|
|||||||| ||||||| | || ||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||| || ||||||||||| |
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|
| T |
36627817 |
tggtaattctatctttaatcctaccagcaaaaggatagtatttggatagaagttgagataaggattttcgaagttgtgatatttttgaattttggtc |
36627913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 36633284 - 36633456
Alignment:
| Q |
1 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
100 |
Q |
| |
|
||||||||||| | ||| || ||||| |||| |||| ||||||||| |||||||| | ||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
36633284 |
aaagggttcaacaatttttcagtgggattttgaagaaactctgaaagattgttttttacctttgtgacaaaaaataacacaccttgatcattgcattcaa |
36633383 |
T |
|
| Q |
101 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaag |
173 |
Q |
| |
|
|||||||||||||||| | || ||||||||| | ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
36633384 |
tggtaattttatctttaatcctaccagcaaaatgatagaatttagataaaagttgagataaagattttcgaag |
36633456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45306841 - 45307066
Alignment:
| Q |
1 |
aaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaa |
100 |
Q |
| |
|
|||| ||||||| ||| |||| ||| |||| ||| || || || ||||| ||||| |||||||| || | ||| | ||||||||| || |||||||||| |
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|
| T |
45306841 |
aaagagttcaatgtttcctctgagggattttggaggatgtcggatagtttattttttatctttgtcactataaacgtcacaccttggtcgttacattcaa |
45306940 |
T |
|
| Q |
101 |
tggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaattttggtcact |
200 |
Q |
| |
|
|||||||||||||||| || || ||||| ||| ||||||||| |||| || ||||||||| ||||||| ||| |||||| || |||||||||||||| |
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|
| T |
45306941 |
tggtaattttatctttcaacctaccagcgaaaatgtagtatttggatagaatttgagataaggattttctgagttgtgatatttttgaattttggtcact |
45307040 |
T |
|
| Q |
201 |
accctcatttggattgtaaaagaaaa |
226 |
Q |
| |
|
| ||||||| || ||||||||||| |
|
|
| T |
45307041 |
gtcttcatttgaatggtaaaagaaaa |
45307066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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