View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1986_low_8 (Length: 316)
Name: NF1986_low_8
Description: NF1986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1986_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 166 - 311
Target Start/End: Original strand, 24498864 - 24499009
Alignment:
| Q |
166 |
aaaggaagggtgggttaagagtctttattaggtgaagctggctcattaaaccaaaaacagccaattaaataacgtggtcctacctacgtgttctccatct |
265 |
Q |
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| T |
24498864 |
aaaggaagggtgggttaagagtctttattgggtgaagctggctcattaaaccaaaaacagccaattaaataacgtggtcctacctacgtgttctccatct |
24498963 |
T |
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| Q |
266 |
tatacgtggcgagttttgattgtgggctttgtgaaagtactctgtg |
311 |
Q |
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| T |
24498964 |
tatacgtggcgagttttgattgtgggctttgtgaaagtactctgtg |
24499009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 24498697 - 24498806
Alignment:
| Q |
23 |
cttaatgtatctttgctcatatttgaattagagattttgcaattgtgtatgggtatggatacttctaggttttgctcgtccaaatcatcgcaattgtgta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24498697 |
cttaatgtatctttgctcatatttgaattagagattttgcaattgtgtatgggtatggatacttctaggtttcgctcgtccaaatcatcgcaattgtgta |
24498796 |
T |
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| Q |
123 |
tgagttttat |
132 |
Q |
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|||||||||| |
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| T |
24498797 |
tgagttttat |
24498806 |
T |
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