View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19870_low_1 (Length: 334)
Name: NF19870_low_1
Description: NF19870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19870_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 45159550 - 45159239
Alignment:
| Q |
17 |
ttttaggtatatttgagggtataataaaagtgttcatatactaaacacaagattcaaaacttgttagaacaaacttatctcacctgaagtagtgcaagaa |
116 |
Q |
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| T |
45159550 |
ttttaggtatatttgagggtataataaaagtgttcatatactaaacacaagatttaaaacttgttagaacaaacttatctcacctgaagtagtgcaagaa |
45159451 |
T |
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| Q |
117 |
cgttgcatgctcgagttgattgtcctagagtaagggtcggtggtgaaagagtacaatatattgaagttatttcctgagg--nnnnnnnnnnctaattagt |
214 |
Q |
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| T |
45159450 |
cgttgcacgctcgagttgattgtcctagagtaagggtcggtggtgaaagagtacaatatattgaagttatttcctaaagaaaaaaaaaaaactacttagt |
45159351 |
T |
|
| Q |
215 |
gt-gtgaaggcagctaataaacacttcttaaaacacatgaatgcttaaaaattaaaactatcaaggaacaaatagtattaataagttaatttaaaaacat |
313 |
Q |
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| T |
45159350 |
gtggtgaaggcaactaataaacacttcttaaaacacatgaatgcttaaaaattaaaactatcaaggaacaaatagtattaataagttaatttaaaaacat |
45159251 |
T |
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| Q |
314 |
ttagagtataat |
325 |
Q |
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|||||||||||| |
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| T |
45159250 |
ttagagtataat |
45159239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 24128700 - 24129010
Alignment:
| Q |
21 |
aggtatatttgagggtataa---taaaagtgttcatatactaaacacaagattcaaaacttgttagaacaaacttatctcacctgaagtagtgcaagaac |
117 |
Q |
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| T |
24128700 |
aggtatatttgggggtataataataaaagtgttcatatactaaacacatgattcaaaacttgttagaataaactcatctcacctgaagtagtgcaagaac |
24128799 |
T |
|
| Q |
118 |
gttgcatgctcgagttgattgtcctagagtaagggtcggtggtgaaagagtacaatatattgaagttatttcctga--ggnnnnnnnnnnctaattagtg |
215 |
Q |
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||| || |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
24128800 |
gttacacactcgagttgattgtgctagagtaagagtcggtggtaaaagagtacaatatattgaagttatttcctgaaggaaaaaaaaaaactacttagtg |
24128899 |
T |
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| Q |
216 |
tgtg-aaggcagctaataaacacttcttaaaacacatgaatgcttaaaaattaaaactatcaaggaacaaatagtattaataagttaatttaaaaacatt |
314 |
Q |
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|||| | |||| | ||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
24128900 |
tgtgcagggcaaccaataaacactttttaaaacatatgaatgtttaaaaattaaaactatcaaagaacaaatagtattaataagttaatttaaaaacagt |
24128999 |
T |
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| Q |
315 |
tagagtataat |
325 |
Q |
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||||| ||||| |
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| T |
24129000 |
tagagaataat |
24129010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 9517729 - 9517623
Alignment:
| Q |
33 |
gggtataataaaagtgttcatatactaaacacaagattcaaaacttgttagaacaaacttatctcacctgaagtagtgcaagaacgttgcatgctcgagt |
132 |
Q |
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||||||||| ||||| | ||||| ||||||||| |||||| ||| ||| ||||||||||| ||||||||||||||| ||||| ||||| ||||||| |
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| T |
9517729 |
gggtataatgaaagtttccatatgttaaacacaatattcaacactcattatgacaaacttatcgcacctgaagtagtgccagaacattgcacactcgagt |
9517630 |
T |
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| Q |
133 |
tgattgt |
139 |
Q |
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| T |
9517629 |
tgattgt |
9517623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 5120080 - 5120179
Alignment:
| Q |
94 |
tctcacctgaagtagtgcaagaacgttgcatgctcgagttgattgtcctagagtaagggtcggtggtgaaagagtacaatatattgaagttatttcctga |
193 |
Q |
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|||||||||||||| ||||||||| | ||| |||||||||||||| | | || ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
5120080 |
tctcacctgaagtaatgcaagaacatggcacactcgagttgattgtgagggggagagattcggtggtgaaagagtaggatatattgaaattatttcctga |
5120179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 40817938 - 40817991
Alignment:
| Q |
97 |
cacctgaagtagtgcaagaacgttgcatgctcgagttgattgtcctagagtaag |
150 |
Q |
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| T |
40817938 |
cacctgaagtagtgccagaacattgcacactcgagttgattgtgcttgagtaag |
40817991 |
T |
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