View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19871_high_2 (Length: 281)
Name: NF19871_high_2
Description: NF19871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19871_high_2 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 36575460 - 36575711
Alignment:
| Q |
16 |
atggcacaggagaagtgtctgttgatcaatatcatcgcaataaagtaagcacctaaaccatgactctttctccgaccgcgacacagtgttcggcaccacc |
115 |
Q |
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| T |
36575460 |
atggcacaggagaagtttatgttgatcaatatcatcgcaataaagtaagcacctaaaccatgactctttctccgaccgcgacacagtgtttggcgccacc |
36575559 |
T |
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| Q |
116 |
attgaacttgaatccatctctaaaacgctaaaccatggattgtggagaaggtggaggggtcatgaatcatggtcggcaaaggcggcggtggttgggggag |
215 |
Q |
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| T |
36575560 |
gttgaactcgaatccatcgctaaaacgctaaaccatggattgtggagaaggtggaggggtcatgaatcatggtcggcaaaggcggcggtggttgggggag |
36575659 |
T |
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| Q |
216 |
aaagagaagaggatcggagaaggaagaaggcgaagagggccattgttgttgt |
267 |
Q |
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| T |
36575660 |
aaagagaagaggatttgagaaggaagaaggagaagagggccattgttgttgt |
36575711 |
T |
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Target: scaffold0110 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29136 - 29189
Alignment:
| Q |
16 |
atggcacaggagaagtgtctgttgatcaatatcatcgcaataaagtaagcacct |
69 |
Q |
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| T |
29136 |
atggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacct |
29189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12274 - 12323
Alignment:
| Q |
16 |
atggcacaggagaagtgtctgttgatcaatatcatcgcaataaagtaagc |
65 |
Q |
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| T |
12274 |
atggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagc |
12323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 20011 - 20060
Alignment:
| Q |
16 |
atggcacaggagaagtgtctgttgatcaatatcatcgcaataaagtaagc |
65 |
Q |
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| T |
20011 |
atggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagc |
20060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 43236844 - 43236905
Alignment:
| Q |
93 |
gcgacacagtgttcggcaccaccattgaacttgaatccatctctaaaacgctaaaccatgga |
154 |
Q |
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| T |
43236844 |
gcgacacagtgttcggcgccaccgtcgaactcgaatccatcgctaaaactctaaaccatgga |
43236905 |
T |
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