View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19871_low_3 (Length: 257)
Name: NF19871_low_3
Description: NF19871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19871_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1160887 - 1160667
Alignment:
| Q |
18 |
aaaacttgctggactgtcatgacagcatcgctgccagtgagcagc-aacaccactggaccnnnnnnncaaaaggaggcagcaactcattaacgtgctaag |
116 |
Q |
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| T |
1160887 |
aaaacttgctggactgtcatgacagcatcgctgccagtgagcagccaacaccactggaccaaaaaaacaaaaggaggcagcagctcattaacgtgctaag |
1160788 |
T |
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| Q |
117 |
caatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctccacga |
216 |
Q |
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| T |
1160787 |
caatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctccacga |
1160688 |
T |
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| Q |
217 |
gctcttcccaagttacaatga |
237 |
Q |
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||||||||||||||||||||| |
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| T |
1160687 |
gctcttcccaagttacaatga |
1160667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 21977565 - 21977465
Alignment:
| Q |
114 |
aagcaatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctcca |
213 |
Q |
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| T |
21977565 |
aagcaatcccgaggactccaactccactcatagaacatgcaactcggagttgaggttctaccaataatccacctccaagacatcaccttcacctcttcca |
21977466 |
T |
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| Q |
214 |
c |
214 |
Q |
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| T |
21977465 |
c |
21977465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 4636666 - 4636753
Alignment:
| Q |
126 |
ggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctcca |
213 |
Q |
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| T |
4636666 |
ggacaccaactccactcataaaacatgcaagccggaattgtggttctaccgagaatccacctccacgacaacaccttcaccgcctcca |
4636753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 21113863 - 21113901
Alignment:
| Q |
24 |
tgctggactgtcatgacagcatcgctgccagtgagcagc |
62 |
Q |
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| T |
21113863 |
tgctggactgtcatgacagcagcgctgccagtgaacagc |
21113901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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