View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19871_low_6 (Length: 239)
Name: NF19871_low_6
Description: NF19871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19871_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 5213693 - 5213921
Alignment:
| Q |
19 |
acttcatcatatttccaacaagatttacattagaattctaggtttttcctccaacccatatggaaaaaatcagcacaagttgannnnnnnnccgcaagga |
118 |
Q |
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| T |
5213693 |
acttcatcatatttccaacaagatttacattagaattctaggtttttcctccaacccatatggaaaaaatcagcacaagtttattttttttccgcaagga |
5213792 |
T |
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| Q |
119 |
aag--------tgcatgggacataggccaattgtccctctgcaatgtcatgtgcacgggaaagcatctcaggcacaatggacaacaaccagggccgaatt |
210 |
Q |
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| T |
5213793 |
aagagcatgggtgcatgggacataggccaattgtccctctgcagtgtcatgtgcacgggaaagcatctcgggcacaatggacaacaaccagggccgaatt |
5213892 |
T |
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| Q |
211 |
ttgtagtttttcattcgttctttgaatgc |
239 |
Q |
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| T |
5213893 |
ttgtagtttttcattcgttctttgaatgc |
5213921 |
T |
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