View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_high_12 (Length: 383)
Name: NF19872_high_12
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 53618654 - 53618289
Alignment:
| Q |
1 |
actagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaacagtctaggaaagctactaaaccatagcat |
100 |
Q |
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| T |
53618654 |
actagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaaaagtctaggaaagctactaaaccatagcat |
53618555 |
T |
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| Q |
101 |
aaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaaaaactttcgagtttct |
200 |
Q |
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| T |
53618554 |
aaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaaaaactttcgagtttct |
53618455 |
T |
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| Q |
201 |
tcatcgtgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaaacttggcagcaagcca |
300 |
Q |
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| T |
53618454 |
tcatcatgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaaacttggcagcaagcca |
53618355 |
T |
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| Q |
301 |
aacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53618354 |
aacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaat |
53618289 |
T |
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