View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_high_2 (Length: 810)
Name: NF19872_high_2
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 11 - 792
Target Start/End: Original strand, 784083 - 784863
Alignment:
| Q |
11 |
aagcaaaggggtaaaaaagtgaagagcagaaaggaaatacatataatgaaagaaatatcttgattgaaagcatttgttaacttgcattgtttgtcttttt |
110 |
Q |
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| T |
784083 |
aagccaaggggtaaaaaagtgaagagcagaaaggaaatacatataatgaaagaaatatcttgattgaaagcatttgttaacttgcattgtgtgtcttttt |
784182 |
T |
|
| Q |
111 |
gctttactttttgttatgatttgaagcttggttatgcattctttccatgaccatatatgaacctagctgctccctctgtgtatacatgagtttcattgtt |
210 |
Q |
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| T |
784183 |
gctttactttttgttatgatttgaagcttagttatgcattctttccatgaccatatatgaacctagctgctccctctgtgtatacatgagtttcattgtt |
784282 |
T |
|
| Q |
211 |
tagcctgccaatagtatcattcaatgtctatcagaattagaccacaaaatatgattataacaacaacaagataatagtaagtttaagccattcacttacg |
310 |
Q |
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| T |
784283 |
tagcctgccaatagtatcattcaatgtctatcagaattagaccacaaaatatgattataacaacaacaagattatagtaagtttaagcctttcacttacg |
784382 |
T |
|
| Q |
311 |
aattacgaacagctttgctcaaagttgatgatgacacaaatgtttttccatcaagatatctattctcttcaataatcctctgtctcattctgatatctaa |
410 |
Q |
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| T |
784383 |
aattacgaacagctttgctcaaagttgatgatgacacaaatgtttttccatcaagatatctattctcttcaataatcctctgtctcattctgatatctaa |
784482 |
T |
|
| Q |
411 |
ttcttcagcactaaggtccaatggagaatctgaagcctgttataggccaaggaaaaattaacatagaatacttagctttggtcataagaacttgtcaaaa |
510 |
Q |
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| T |
784483 |
ttcttcagcactaaggtccaatggagaatctgaagcctgttataggccaaggaaaaattaacatagaatacttagctttggtcataagaacttgtcaaaa |
784582 |
T |
|
| Q |
511 |
cttcgaaatttatcgtcaataagtctataattttaccaggacccatccccaaatatcagcataagatgggatatgagctgaataaggcaccacatctgta |
610 |
Q |
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| T |
784583 |
cttcaaaatttatcgtcaat-agtctataattttaccaggacccatccccaaatatcagcataagatgggatatgagctgaataaggcaccacatctgta |
784681 |
T |
|
| Q |
611 |
aacatgaagaaaacatgttaatataatttgacttaattatagttgtaagtagcattatcatatctttgtctaggcaaatacttacacttgaaaacttgtc |
710 |
Q |
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| T |
784682 |
aacatgaagaaaacatgttaatataatttgacttaattatagttgtaagtagcattatcatatctttgtctaggcaaatacttacacttgaaaacttgtc |
784781 |
T |
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| Q |
711 |
tcaaggtgttgtaaatacatgagaaaacttctgtgtggctgaatattccagcaggccctgcctgcataagaataataacaac |
792 |
Q |
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| T |
784782 |
tcaaggtgttgtaaatacatgagaaaacttctgtgtggctgaatattccagcaggccctgcctgcataagaataataacaac |
784863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 19335796 - 19336043
Alignment:
| Q |
23 |
aaaaaagtgaagagcagaaaggaaatacatataatgaaagaaatatcttgattgaaagcatttgtta--acttgcattgtttgtctttttgctttacttt |
120 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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| T |
19335796 |
aaaaaagtgaaaagcagaatggaaatacatataatgaaagaaatatcttgattgaacgcctttgttataacttgcattgtttgtctttttgctttacttt |
19335895 |
T |
|
| Q |
121 |
ttgttatgatttgaagcttggtta-------tgcattctttccatgaccatatatgaacctagctgctccctctgtgtatacatgagtttcattgtttag |
213 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| | |
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| T |
19335896 |
ttgttttgatttgaagcttggttatttgttttgcattgtttccatgaccatatatgaacctagttcctccctc--tgtatacatgagtttcattgtgt-- |
19335991 |
T |
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| Q |
214 |
cctgccaatagtatcattcaatgtctatcagaattagaccacaaaatatgatta |
267 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
19335992 |
--ggccagtagtatcattcaatgtctatcagaattagagcacaaaatttgatta |
19336043 |
T |
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