View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19872_low_1 (Length: 897)
Name: NF19872_low_1
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 750; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 20 - 879
Target Start/End: Original strand, 1021089 - 1021952
Alignment:
| Q |
20 |
catcatttcaataaacctaaccaacctagatatcatagcacttcagattaactaacacttgcactt-gtttttcaagttctt-gtttcccttcaaaacct |
117 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
1021089 |
catcacttcagtaaacctaaccaacctagata-----gcacttcagattaac----acttgcactttgtttttcaagttctttgtttcccttcaaaacct |
1021179 |
T |
|
| Q |
118 |
tcttcaacatttgtttttgtttaatatacgcatacacacgttcaaata-----------tacggtatatatataccacctgaaacaatgggttgtacggt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
1021180 |
tcttcaacatttgtttttgtttaatatacgcatacagacgttcaaatacgtgtataatatacggtatatatataccacctgaaacaatgggttgcactgt |
1021279 |
T |
|
| Q |
207 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021280 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
1021379 |
T |
|
| Q |
307 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1021380 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctctccgtctccgacgacattcccgctgttttca |
1021479 |
T |
|
| Q |
407 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021480 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
1021579 |
T |
|
| Q |
507 |
aattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatcaaaat |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021580 |
aattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgattttccgaactggttcattccaaccgcgcatcaaaat |
1021679 |
T |
|
| Q |
607 |
gaatcaacagcttctgaaacttcttctgtttggaattgggaaaattttcaacctcctccttctccaccaaactccgaatatttccggcaacgttctcaac |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021680 |
gaatcaacagcttctgaaacttcttctgtttggaattgggagaattttcaacctcctccttctccaccaaactccgaatatttccggcaacgttctcaac |
1021779 |
T |
|
| Q |
707 |
cgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttctacaacatgttccactcgaaaattcatcttcagaatcacaagactga |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021780 |
cgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttctacaacatgttccactcgaaaattcatcttcagaatcacaagactga |
1021879 |
T |
|
| Q |
807 |
aacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagtgattgggaggattgttat |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021880 |
aacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagtgattgggaggattgttat |
1021952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 303 - 589
Target Start/End: Original strand, 4970737 - 4971014
Alignment:
| Q |
303 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
402 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttccgcactctccaccttcgctgccagtgaacctctcgccgtcttcgacgacattcccgccgtt |
4970836 |
T |
|
| Q |
403 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
502 |
Q |
| |
|
||| |||||||||| |||||| | | ||||||||||| |||| || | ||||||| ||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
4970837 |
ttcgtcaacacagtaaaaactcataaacaaccgccacctc------ctccagccacagtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
4970930 |
T |
|
| Q |
503 |
ggaaaattccggtgaagcttcctcacattctttccgattca---------agcgtttgttcaacgccgagaagcgagtttccgaactggttcattc |
589 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4970931 |
------------tgaagcttcctcacattctttccaattcaagcatttgtagcatttgttcaacgccgagaagcgagtttccgaactggttcattc |
4971014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 303 - 609
Target Start/End: Complemental strand, 6345091 - 6344803
Alignment:
| Q |
303 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccaccttcgccgccagtgaacctctcgtcgtctccgacgacattcccgccgtt |
6344992 |
T |
|
| Q |
403 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
502 |
Q |
| |
|
||| |||||||||| |||||| ||| || |||||||| |||| || ||||||||| ||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
6344991 |
ttcgtcaacacagtaaaaactcatcaacaacagccacctc------ctccagccaccgtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
6344898 |
T |
|
| Q |
503 |
ggaaaattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatca |
602 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6344897 |
------------tgaagcttcctcacattttttctgattcaagcatttgttcaatgtcgagaagcgagtttccgaactggttcattccaaccgcgcatca |
6344810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 411
Target Start/End: Complemental strand, 31344725 - 31344534
Alignment:
| Q |
220 |
aacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgta |
319 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||| ||||| | || ||||| || ||||||| || ||||| || || ||||| |
|
|
| T |
31344725 |
aacgaagatacagtgcgacggtgcaaagaccgtcgccgtcttatgaaagaagctgtctatgctcgtcatcacctcgccgctgctcactccgactactgcc |
31344626 |
T |
|
| Q |
320 |
actctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaac |
411 |
Q |
| |
|
|| || || |||||||| |||| ||||||||||||||| |||||||||||||| |||| || || ||| |||||| |||||||||||| |
|
|
| T |
31344625 |
gttccctccgtctcaccggcaccgccctctccactttcgcctccggtgaacctctctccgtttctgataacactcccgccgttttcatcaac |
31344534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University