View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19872_low_10 (Length: 417)

Name: NF19872_low_10
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19872_low_10
NF19872_low_10
[»] chr6 (2 HSPs)
chr6 (20-237)||(34355853-34356069)
chr6 (271-411)||(34356105-34356245)
[»] chr2 (10 HSPs)
chr2 (30-207)||(27268007-27268185)
chr2 (30-201)||(36641209-36641380)
chr2 (30-207)||(16206383-16206560)
chr2 (34-207)||(23379717-23379886)
chr2 (30-139)||(20661105-20661214)
chr2 (78-213)||(2058546-2058681)
chr2 (30-134)||(44886212-44886316)
chr2 (30-219)||(23761494-23761682)
chr2 (30-219)||(23789638-23789826)
chr2 (30-134)||(23762627-23762730)
[»] chr5 (6 HSPs)
chr5 (30-201)||(19741649-19741820)
chr5 (34-207)||(34920052-34920225)
chr5 (30-201)||(2157896-2158067)
chr5 (30-207)||(22292223-22292400)
chr5 (34-106)||(21092152-21092224)
chr5 (30-106)||(28246202-28246278)
[»] chr8 (5 HSPs)
chr8 (30-216)||(14657825-14658011)
chr8 (30-207)||(15990529-15990706)
chr8 (30-106)||(1186490-1186566)
chr8 (30-105)||(14505667-14505742)
chr8 (30-168)||(19299140-19299278)
[»] chr1 (9 HSPs)
chr1 (30-201)||(41117039-41117210)
chr1 (89-201)||(49372174-49372286)
chr1 (34-217)||(24427618-24427785)
chr1 (30-168)||(40490133-40490271)
chr1 (29-135)||(52147827-52147933)
chr1 (30-207)||(30033426-30033603)
chr1 (30-134)||(9361684-9361788)
chr1 (30-105)||(21701592-21701667)
chr1 (30-134)||(24083292-24083396)
[»] chr3 (12 HSPs)
chr3 (30-207)||(38015181-38015358)
chr3 (30-201)||(16739549-16739720)
chr3 (30-207)||(6006154-6006331)
chr3 (30-105)||(17790098-17790173)
chr3 (30-105)||(19098540-19098615)
chr3 (30-105)||(31809108-31809183)
chr3 (30-106)||(53437481-53437557)
chr3 (34-129)||(53394757-53394852)
chr3 (30-216)||(49643731-49643917)
chr3 (30-207)||(31228082-31228259)
chr3 (30-86)||(31661092-31661148)
chr3 (30-86)||(31935205-31935261)
[»] chr4 (8 HSPs)
chr4 (32-216)||(16582459-16582643)
chr4 (30-216)||(20527898-20528084)
chr4 (30-207)||(30859207-30859384)
chr4 (30-106)||(55227557-55227633)
chr4 (30-82)||(16431474-16431526)
chr4 (30-105)||(4235259-4235334)
chr4 (30-168)||(54823552-54823690)
chr4 (30-207)||(30191066-30191243)
[»] chr7 (7 HSPs)
chr7 (30-201)||(15633079-15633250)
chr7 (30-216)||(11342928-11343113)
chr7 (30-201)||(13015082-13015253)
chr7 (30-105)||(41601379-41601454)
chr7 (30-104)||(32480162-32480236)
chr7 (158-216)||(3205378-3205436)
chr7 (30-134)||(17238792-17238896)
[»] scaffold0011 (1 HSPs)
scaffold0011 (30-134)||(191123-191227)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 34355853 - 34356069
Alignment:
Q  20 gctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcc 119  Q
    |||||| | |||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||  | |||| ||||    
T  34355853 gcttttcgcataacaaacttcaccctagagttaaaaaataaagaagtaaacaaagaacgacaagaagaaataatgcaaccaaattcgg-catgtcgttcc 34355951  T
Q  120 tattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 219  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34355952 tattagaaagaaaagtatcagaaatcagcttagactccgtttcaaaatttacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 34356051  T
Q  220 ggagcttaacaactatac 237  Q
     |||||||||||||||||    
T  34356052 agagcttaacaactatac 34356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 411
Target Start/End: Original strand, 34356105 - 34356245
Alignment:
Q  271 gagttaattacatagtatatctcttattcctttaaatcaagagttaagaggtttcctagactttttgacctgtcaatgtaattttcctttaaatcaagag 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  34356105 gagttaattacatagtatatctcttattcctttaaatcaagagttaaaaggtttcctagaatttttgacctgtcaatgtaattttcgtttaaatcaagag 34356204  T
Q  371 ttaagatgctaaatatttccttggttcattatattcttcga 411  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  34356205 ttaagatgccaaatatttccttggttcattatatttttcga 34356245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 27268007 - 27268185
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgc-aaccaaattcgaacgtgtcattcctattagaaa 128  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || | ||| |    
T  27268007 taacaaactccaccctagagttagaaaataaagaaataaacaaagaatgacaagaagaaataatgcaaaccaaattcggacgtgtcatttctgtcagaga 27268106  T
Q  129 gaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
    |||||| ||||||  ||| |||||| |||||||||||||| ||| ||||||| |  |||||||| |||||||| |||||    
T  27268107 gaaaagcatcagacgtcaacttaaaatccgtttcaaaatccacattatcaaacttcatgtcacttaaccattgcaaagc 27268185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 36641380 - 36641209
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||| |||||| |||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||||| ||| ||    
T  36641380 taacaaactccacccgagagttgaaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcgttcctatcagagag 36641281  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| || ||  ||| | || ||||||||||| ||||||||||| || ||||| |||||||||||    
T  36641280 aaaagcatcagcaaacaatttagaatctgtttcaaaatccacactatcaaactgcatgtcgctcaaccattg 36641209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 16206560 - 16206383
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| ||| ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  16206560 taacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 16206461  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||||||||| ||| | ||||| || || |||||||||||||| |||||    
T  16206460 gaaggcttcagctgtcaacttagagtctgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 16206383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 23379886 - 23379717
Alignment:
Q  34 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 133  Q
    ||||||||||||||||||  |||||  || | ||||||||||| ||||||||||   |||||||||||||||| | ||||| ||||| | || ||||||     
T  23379886 aaactccaccctagagttggaaaatacagcagtaaacaaagaacgacaagaaga---aatgcaaccaaattcggatgtgtcgttcctgtcag-aagaaag 23379791  T
Q  134 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
    | ||||| |  ||  ||| | ||| |||| ||||| || ||||||||||| |||||||||||||| ||||||||    
T  23379790 gcatcagcagacaatttagaatccatttcgaaatccacgctatcaaattgcatgtcactcaaccactgtaaagc 23379717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 20661214 - 20661105
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||||||||| || ||||| ||||  ||||  ||||| ||||||||| |||||||||||| |||||  || | |||||| | || || ||    
T  20661214 taacaaactccaccctagaggtagaaaataaagagttaaaataagaacgacaagaagtaataatgcaaccgaattcagacatttcattcttgtttgagag 20661115  T
Q  130 aaaagtatca 139  Q
    ||||||||||    
T  20661114 aaaagtatca 20661105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 2058681 - 2058546
Alignment:
Q  78 gacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatc 177  Q
    ||||||| ||||||||| ||||||||||  | |||||||| ||| |||| ||||||| ||||||  | |  ||| | |||||||||||||| || |||||    
T  2058681 gacaagatgaaataatggaaccaaattcagatgtgtcatttctagtagacagaaaagcatcagatgtgactttagagtccgtttcaaaatccacgctatc 2058582  T
Q  178 aaattgtatgtcactcaaccattgtaaagccgaatg 213  Q
     || || || ||||| | |||||| |||||||||||    
T  2058581 gaactgcatatcacttagccattgcaaagccgaatg 2058546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 44886316 - 44886212
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||||| | ||||| |||||| |||| ||    
T  44886316 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaattcggatgtgtcgttcctagtagacag 44886217  T
Q  130 aaaag 134  Q
    |||||    
T  44886216 aaaag 44886212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 23761494 - 23761682
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| || |||| |||||||| |||||||||||  | ||||| |||||| |||| |     
T  23761494 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaa 23761592  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 219  Q
     |||| |||     |||||||| | || ||||| || || ||| ||||||| || || |||   ||||||||||||||||| ||||||||    
T  23761593 caaagcatccaccgtcagcttagagtctgtttcgaagtccacattatcaaagtgcatatcatcaaaccattgtaaagccgagtgcaagcc 23761682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 23789638 - 23789826
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| || |||| |||||||| |||||||||||  | ||||| |||||| |||| |     
T  23789638 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaa 23789736  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 219  Q
     |||| |||     |||||||| | || ||||| || || ||| ||||||| || || |||   ||||||||||||||||| ||||||||    
T  23789737 caaagcatccaccgtcagcttagagtctgtttcgaagtccacattatcaaagtgcatatcatcaaaccattgtaaagccgagtgcaagcc 23789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 23762627 - 23762730
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| ||||||| |||||||| || ||||||||  |  |||| |||||| |||| ||    
T  23762627 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgacaagaggaaataatacagccaaattcagatttgtcgttcctagtagacag 23762725  T
Q  130 aaaag 134  Q
    |||||    
T  23762726 aaaag 23762730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 19741649 - 19741820
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||| | ||||||||||||  ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| | ||| ||    
T  19741649 taacaaatttcaccctagagttggaaaataaagaagtaaacaaagaacgacaagaagaaataatgcagccaaattcggacgtgtcattcctgtcagagag 19741748  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||||  ||| |||||| |||||||||||||||||| ||||||| || |||||||| ||||||||    
T  19741749 aaaagcatcagacgtcaacttaaaatccgtttcaaaatctacattatcaaactgcatgtcacttaaccattg 19741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 34920052 - 34920225
Alignment:
Q  34 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 133  Q
    |||||| |||||||||||| ||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||  | ||||||||||| | | | ||||||    
T  34920052 aaactctaccctagagttagaaaataaagagttaaacaaagaacgacaagaagtaataatgcaaccaaattcagaagtgtcattcctgtcatagagaaaa 34920151  T
Q  134 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
    | ||||    |||  ||||| |||||||||||||| ||| ||||||| || || ||||| | |||||| |||||    
T  34920152 gcatcaaccgtcaaattaaaatccgtttcaaaatccacattatcaaactgcatatcactgagccattgcaaagc 34920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 2157896 - 2158067
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||| ||||||  ||||| ||| |   ||||| ||| ||||||||||||||||||| ||||||||| | ||||||||||| |  || ||    
T  2157896 taacaaactccacccgagagttggaaaataaaggagggaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcattcctgtcggagag 2157995  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  2157996 aaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattg 2158067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 22292400 - 22292223
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  22292400 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 22292301  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | ||||| || || |||||||||||||| |||||    
T  22292300 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 22292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 21092224 - 21092152
Alignment:
Q  34 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 106  Q
    ||||||||||||||||||| | ||  | | | ||||||||||| ||||||| ||||||||||| |||||||||    
T  21092224 aaactccaccctagagttagagaaaaaggtactaaacaaagaacgacaagatgaaataatgcagccaaattcg 21092152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 28246278 - 28246202
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 106  Q
    |||||||||||| |||||||||| ||||  ||| | | |||||||||  ||| || ||||||||||| |||||||||    
T  28246278 taacaaactccatcctagagttagaaaagaaagtattgaacaaagaacaacaggaggaaataatgcagccaaattcg 28246202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 14657825 - 14658011
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||| | || || |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||    
T  14657825 taacaaactccaccctagagttagaaactaaataagtaaacaaataatgacaagaagaaataatgcaaccaaattcggacgtgtcgttcctgtcagagag 14657924  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
    ||||| ||||||  |||||||| | |||||||||||||| || |||||||| |  | |||||||||||| ||||| ||||| |||||    
T  14657925 aaaagcatcagacgtcagcttagaatccgtttcaaaatccacgctatcaaactacaagtcactcaaccactgtaatgccgagtgcaa 14658011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 15990529 - 15990706
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| ||| ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  15990529 taacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 15990628  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||||||||| | | | ||||| || || |||||||||||||| |||||    
T  15990629 gaaggcttcagctgtcaacttagagtctgtttcaaaatccaaattgtcaaactgcatatcactcaaccattgcaaagc 15990706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 1186566 - 1186490
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 106  Q
    ||||||||||||||||||||||| ||||| ||| |   || |||||| |||| || |||||||||||||||||||||    
T  1186566 taacaaactccaccctagagttagaaaatgaagtacagaataaagaacgacaggaggaaataatgcaaccaaattcg 1186490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 14505742 - 14505667
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  14505742 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 14505667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 19299140 - 19299278
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||| ||||||||||||| ||||  |||   | ||||||||| |||| || |||||||| || | ||||| | ||  |||||||||| |||||||    
T  19299140 taacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaag 19299239  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 168  Q
     |||| |||||  |||| |||| | || |||||||||||    
T  19299240 gaaagcatcagctatcaacttagagtctgtttcaaaatc 19299278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 41117210 - 41117039
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||| ||||||  ||||| ||| | ||||||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| | ||| ||    
T  41117210 taacaaactccacccgagagttggaaaataaagcagtaaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcgttcctgtcagagag 41117111  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| || || |||| | || ||||| ||||| || |||||||| || ||||| |||||||||||    
T  41117110 aaaagcatcagcaaacaacttagaatctgtttcgaaatcgacgctatcaaactgcatgtcgctcaaccattg 41117039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 49372286 - 49372174
Alignment:
Q  89 ataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgt 188  Q
    |||||||||||||||||| |||||||||| || | ||| ||||||| ||||||  ||| |||| | || ||||||||||| ||| |||||||||| ||||    
T  49372286 ataatgcaaccaaattcggacgtgtcatttctgtcagagagaaaagcatcagacgtcaacttagaatctgtttcaaaatccacattatcaaattgcatgt 49372187  T
Q  189 cactcaaccattg 201  Q
    |||| ||||||||    
T  49372186 cacttaaccattg 49372174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 24427618 - 24427785
Alignment:
Q  34 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 133  Q
    |||||| |||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| ||||||||||  || |                ||||||    
T  24427618 aaactcgaccctagagttagaaaataaagaagtaaacaaagaacaacaagaagaaataatgaaaccaaattcagacat----------------agaaaa 24427701  T
Q  134 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaag 217  Q
    | ||||||| ||||||||    ||||||||||||| || ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  24427702 gcatcagaagtcagcttaggacccgtttcaaaatccacgctatcaaattgcatgtcactcaaccattataaagccaaatgcaag 24427785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 40490133 - 40490271
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  | ||  |||| |||||| |||| || ||||| || || ||||||||||| ||||| |||||| ||| |||    
T  40490133 taacaaactccaccctagagttagaaaagaatgagctaaataaagaacgacatgaggaaatgatacagccaaattcgaaagtgtcgttcctagtagcaag 40490232  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 168  Q
    ||||| |||| |  |||||||| | ||||||||||||||    
T  40490233 aaaagcatcatatgtcagcttagagtccgtttcaaaatc 40490271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 52147827 - 52147933
Alignment:
Q  29 ataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaa 128  Q
    |||||||||| |||| |||||||  ||||| ||| | |||||||||||  |||||||||||||||||| || |||||| ||||||||||||| | ||| |    
T  52147827 ataacaaacttcaccttagagttggaaaataaagcagtaaacaaagaacaacaagaagaaataatgcagccgaattcggacgtgtcattcctgtcagaga 52147926  T
Q  129 gaaaagt 135  Q
    |||||||    
T  52147927 gaaaagt 52147933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 30033603 - 30033426
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  30033603 taacaaactccaccctagagttagaaaagaaagtattgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 30033504  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  30033503 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 30033426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 9361788 - 9361684
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||||||| ||| | |||||| |||| ||    
T  9361788 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaattcgaatgtgccgttcctagtagacag 9361689  T
Q  130 aaaag 134  Q
    |||||    
T  9361688 aaaag 9361684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 21701592 - 21701667
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||| ||| |||| |||||||||||  ||||||||||    
T  21701592 taacaaactccaccctagagttagaaaataaattacgaaacaacgaacgacaggaagaaataatagaaccaaattc 21701667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 24083396 - 24083292
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||| |||||||| ||||  ||||| |||| |   || ||||||| |||||| |  ||||||||||| | ||||| |||||| |||| ||    
T  24083396 taacaaactccaccgtagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaatagtagaaccaaattcggatgtgtcgttcctagtagatag 24083297  T
Q  130 aaaag 134  Q
    |||||    
T  24083296 aaaag 24083292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 38015181 - 38015358
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||| |||||||| ||||| ||||  ||||||||||| ||||| ||| ||||||||||||||||||  ||||||  ||| | | ||| ||    
T  38015181 taacaaactccaccatagagttagaaaataaagagttaaacaaagaacgacaataagtaataatgcaaccaaattcacacgtgttgttcttgtcagagag 38015280  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
    ||||| |||||   ||| |||| | | |||||||||||| ||| ||||||| || |||||||| | ||||||||||||    
T  38015281 aaaagcatcagccgtcaacttagaattcgtttcaaaatccacattatcaaactgcatgtcactgagccattgtaaagc 38015358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 16739549 - 16739720
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| |  || ||    
T  16739549 taacaaactccacccgagagttggaaaataaagtagtgaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtctttcctgtcggagag 16739648  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| |  ||||| |||||||||||    
T  16739649 aaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaacttcatgtcgctcaaccattg 16739720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 6006154 - 6006331
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||| |||| ||  ||| || ||| |||||||    
T  6006154 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataatgcatccaagttcggacaagtcgtttctagtagaaag 6006253  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  6006254 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 6006331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 17790173 - 17790098
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  17790173 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 17790098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 19098615 - 19098540
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  19098615 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 19098540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 31809183 - 31809108
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||  ||||| ||  |  |||||||||| ||||||||||||||||  ||||||||||    
T  31809183 taacaaactccaccctagagttggaaaataaattacgaaacaaagaacgacaagaagaaataatagaaccaaattc 31809108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 53437557 - 53437481
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 106  Q
    ||||||||||||||||||||||| ||||  |||   | ||||| ||| | ||||| |||||||||||||||||||||    
T  53437557 taacaaactccaccctagagttagaaaagaaagtgctgaacaacgaacggcaagaggaaataatgcaaccaaattcg 53437481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 53394852 - 53394757
Alignment:
Q  34 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||| ||||  ||    | ||||| ||| ||||||| ||||||||||||||||||||| ||  |||||||||  |||||||    
T  53394852 aaactccaccctagagttagaaaagaaactgctgaacaacgaacgacaagaggaaataatgcaaccaaattcggacaagtcattcctgctagaaag 53394757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 49643917 - 49643731
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||| ||||| ||||| ||||| |||| |   || ||||||| ||||||||  |  |||||||| | ||||| |||||| |||| ||    
T  49643917 taacaaactccaccctatagttagaaaataaagaactaaaaagcaaacgacaagatgaaataatagagtcaaattcggatgtgtcgttcctagtagacag 49643818  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
    |||||  || ||  |||||||  | || ||||||||||| |||| ||| |  || || ||||| | |||||||| |||||| |||||    
T  49643817 aaaagcgtctgatgtcagcttcgaatcagtttcaaaatccacaccatccatctgcatatcacttagccattgtagagccgagtgcaa 49643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 31228259 - 31228082
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| | | || |||||| |||  || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  31228259 taacaaactccaccctagagttagaaaagaaagtactgaataaagaacgacgggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 31228160  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | ||||| || || |||||||||||||| |||||    
T  31228159 gaaggcttcagttgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 31228082  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 31661092 - 31661148
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaag 86  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||||||||    
T  31661092 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaag 31661148  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 31935261 - 31935205
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaag 86  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||||||||    
T  31935261 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaag 31935205  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 16582459 - 16582643
Alignment:
Q  32 acaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaa 131  Q
    ||||||||||||||| ||||  ||||| ||  | |||||||| || |||||||||||||||| || ||||||||| | ||||| ||||| |  |||||||    
T  16582459 acaaactccaccctaaagttggaaaataaaacagtaaacaaataacgacaagaagaaataatacagccaaattcggatgtgtcgttcctgtcggaaagaa 16582558  T
Q  132 aagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
    ||| |||||||  ||  ||| | ||| |||||||||| || |||||||| || || || ||||||||||||||||| ||||||||    
T  16582559 aagcatcagaagacaatttagaatccatttcaaaatccacgctatcaaactgcatatcgctcaaccattgtaaagctgaatgcaa 16582643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 20527898 - 20528084
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||||||||||||||| |||   |||| |||| |||||| ||||||| |||||||| |||| |||||| || ||||| |||| | |||| ||    
T  20527898 taacaaactccaccctagagttaacaaaagtagaactaaataaagaacgacaagaggaaataatacaactaaattcaaatgtgtcgttccgagtagacag 20527997  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
    ||||| ||||    |||||||| | |||||||| || || ||||||||||| || || |||  |||||| | ||||||||| |||||    
T  20527998 aaaagcatcaatcgtcagcttagagtccgtttcgaagtccacactatcaaaatgcatatcatccaaccactctaaagccgagtgcaa 20528084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 30859384 - 30859207
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  30859384 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 30859285  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  30859284 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 30859207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 55227633 - 55227557
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 106  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||||||||    
T  55227633 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcg 55227557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 16431474 - 16431526
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaa 82  Q
    ||||||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  16431474 taacaaactccaccctagagttagaaaataaaaaagtaaacaaagaacgacaa 16431526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 4235334 - 4235259
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||| ||  |   ||||||||| ||||| ||||||||||  ||||||||||    
T  4235334 taacaaactccaccctagagttagaaaataaattatggaacaaagaacgacaaaaagaaataatagaaccaaattc 4235259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 54823690 - 54823552
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||| ||||||||||||| ||||  |||   | ||||||||| |||| || |||||||| || | ||||| | ||  |||||||||| |||||||    
T  54823690 taacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaag 54823591  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 168  Q
     |||| |||||  |||| |||| | || |||||||||||    
T  54823590 gaaagcatcagctatcaacttagagtctgtttcaaaatc 54823552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 30191066 - 30191243
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||| ||||| ||||  ||| | | ||||||||| |||| ||  |||||||||| ||||||||| ||  ||| ||| |  |||||||    
T  30191066 taacaaactccaccctaaagttagaaaaggaagtactgaacaaagaacgacaggagaaaataatgcagccaaattcggacaagtcgttcatggtagaaag 30191165  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 207  Q
     || |  ||||   ||| |||| | || ||||||||||| ||| | ||||| || || |||||||||||||| |||||    
T  30191166 gaaggcgtcagctgtcaacttagagtctgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 30191243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 15633250 - 15633079
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| ||||||| ||||| |  || ||    
T  15633250 taacaaactccacccgagagttggaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaattcggacgtgtcgttcctgtcggagag 15633151  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  15633150 aaaagaatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattg 15633079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 11343113 - 11342928
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    |||||||||||| | |||||||  ||||   |||| |||| ||||||  |||||||||| ||||||||||||||||| |||||||||| ||| ||||||     
T  11343113 taacaaactccatcatagagttggaaaaagtagaactaaataaagaacaacaagaagaa-taatgcaaccaaattcggacgtgtcatttctagtagaaat 11343015  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
     |||| |||||   | |||||| | |||||||||||||  ||||| |||||||| || | |||||||||||| || |||| ||||||    
T  11343014 gaaagcatcagttgttagcttagaatccgtttcaaaattcacactgtcaaattgcatattactcaaccattgcaaggccggatgcaa 11342928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 13015082 - 13015253
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||| ||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| |||||| || | ||||| ||||| |  || ||    
T  13015082 taacaaactacacccgagagttggaaaataaagcagtgaacaatgaaagacaagaagaaataatgcagccaaatccggatgtgtcgttcctgtcggagag 13015181  T
Q  130 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 201  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||| ||||    
T  13015182 aaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaactattg 13015253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 41601454 - 41601379
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 105  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||| |||||||||||  ||||||||||    
T  41601454 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaggaagaaataatagaaccaaattc 41601379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 32480236 - 32480162
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaatt 104  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||||||    
T  32480236 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaatt 32480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 3205378 - 3205436
Alignment:
Q  158 gtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 216  Q
    ||||||||||| ||| ||||||| || ||||||||||||||||||| | | ||||||||    
T  3205378 gtttcaaaatccacattatcaaactgcatgtcactcaaccattgtacaacagaatgcaa 3205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 17238792 - 17238896
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||| | | ||||| |||||| |||| ||    
T  17238792 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatttggatgtgtcgttcctagtagacag 17238891  T
Q  130 aaaag 134  Q
    |||||    
T  17238892 aaaag 17238896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 191123 - 191227
Alignment:
Q  30 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 129  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||| | | ||||| |||||| |||| ||    
T  191123 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatttggatgtgtcgttcctagtagacag 191222  T
Q  130 aaaag 134  Q
    |||||    
T  191223 aaaag 191227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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