View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_11 (Length: 396)
Name: NF19872_low_11
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_11 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 44636371 - 44636766
Alignment:
| Q |
1 |
ttggacccccaaagaagcaaagcaacctaaaggaaatgcctaaataatttttgcaacaaaattagatttaggatcaaatacttaataattagaacttgta |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636371 |
ttggacccccaaagaagcaaagcaacccaaaggaaatgcctaaataatttttgcaacaaaattagatttaggatcaaatacttaataattagaacttgta |
44636470 |
T |
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| Q |
101 |
tattacaagtatccccgcatagttttccatacatatatgtgtaattcagataataacaatactgcagggacatctcatggtcttnnnnnnncataccggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44636471 |
tattacaagtatccccgcatagttttccatacatatatgtgtaattcagataataacaatactgcagggacatctcatggtcttaaaaaaacataccggc |
44636570 |
T |
|
| Q |
201 |
attgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcctgttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44636571 |
attgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcctgttaa |
44636670 |
T |
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| Q |
301 |
gacgatccaaagttacataaatcctcagttcaccttatcaacaaatgaaaattgtaataaaaacaacnnnnnnnccttctcaagttcttcttccac |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44636671 |
gacgatccaaagttacataaatcctcagttcaccttatcaacaaatgaaaattgtaataaaaacaacaaaaaaaccttctcaagttcttcttccac |
44636766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 193 - 360
Target Start/End: Complemental strand, 44632324 - 44632157
Alignment:
| Q |
193 |
ataccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatag |
292 |
Q |
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||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
44632324 |
atacctgcgttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatag |
44632225 |
T |
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| Q |
293 |
cctgttgagacgatccaaagttacataaatcctcagttcaccttatcaacaaatgaaaattgtaataa |
360 |
Q |
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||||||||| || |||||||||||||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
44632224 |
cctgttgaggttattcaaagttacataaaccctcagttcaccttatcaataaatactaattgtaataa |
44632157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 44653797 - 44653644
Alignment:
| Q |
193 |
ataccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatag |
292 |
Q |
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||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
44653797 |
atacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatag |
44653698 |
T |
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| Q |
293 |
cctgttgagacgatccaaagttacataaatcctcagttcaccttatcaacaaat |
346 |
Q |
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| T |
44653697 |
cctgttgagatgattcaaagttacataaatccacagttcaccatatcaataaat |
44653644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 44682805 - 44682652
Alignment:
| Q |
193 |
ataccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatag |
292 |
Q |
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||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
44682805 |
atacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatag |
44682706 |
T |
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| Q |
293 |
cctgttgagacgatccaaagttacataaatcctcagttcaccttatcaacaaat |
346 |
Q |
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|||||||||| ||| ||||||||||||||||| ||||||||| |||||| |||| |
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| T |
44682705 |
cctgttgagatgattcaaagttacataaatccacagttcaccatatcaataaat |
44682652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 194 - 340
Target Start/End: Complemental strand, 44692495 - 44692349
Alignment:
| Q |
194 |
taccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagc |
293 |
Q |
| |
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|||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
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| T |
44692495 |
taccagcattgatttcattcatggccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagc |
44692396 |
T |
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| Q |
294 |
ctgttgagacgatccaaagttacataaatcctcagttcaccttatca |
340 |
Q |
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| T |
44692395 |
ctgttgcgacgattcaaagttatataaatcctcagttcaccttatca |
44692349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 44683076 - 44682945
Alignment:
| Q |
7 |
ccccaaagaagcaaagcaacctaaaggaaatgcctaaataatttttgcaac----aaaattagatttaggatcaaatacttaataattagaacttgtata |
102 |
Q |
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||||||||||||||| ||| | ||||| ||||||||||||||||||| || |||| |||||||| |||||||||||||||||| ||| |||||||| |
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| T |
44683076 |
ccccaaagaagcaaaacaaaccaaagggaatgcctaaataatttttgtaattaataaaaatagatttacgatcaaatacttaataataagagcttgtata |
44682977 |
T |
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| Q |
103 |
ttacaagtatccccgcatagttttccatacat |
134 |
Q |
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||| ||| |||| |||||||||||| |||||| |
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| T |
44682976 |
ttaaaagcatcctcgcatagttttcaatacat |
44682945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 44692756 - 44692672
Alignment:
| Q |
42 |
aaataatttttgcaacaaaattagatttaggatcaaatacttaataattagaacttgtatattacaagtatccccgcatagtttt |
126 |
Q |
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| T |
44692756 |
aaataaattttgcaacaaaattagacttaggatcagatgcttaataacaagagcttgtatattacaagcatccctacatagtttt |
44692672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 44654220 - 44654164
Alignment:
| Q |
78 |
atacttaataattagaacttgtatattacaagtatccccgcatagttttccatacat |
134 |
Q |
| |
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|||||||||||| ||| ||||||||||| ||| |||| | |||||||||| |||||| |
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| T |
44654220 |
atacttaataataagagcttgtatattaaaagcatcctctcatagttttcaatacat |
44654164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 25103561 - 25103633
Alignment:
| Q |
223 |
ttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcct |
295 |
Q |
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| T |
25103561 |
ttcacatgctcatctggttcaatatccacaatgagagtctgaactatctcatatccataagctgacatggcct |
25103633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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