View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_12 (Length: 388)
Name: NF19872_low_12
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 4195434 - 4195125
Alignment:
| Q |
19 |
aaagggcacgatagtcacgtgagacgtcagagacgacgtagtcacgtaggtaactgccagtggcaaagttttggaggtgtttgtaagcggatggagggtg |
118 |
Q |
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| T |
4195434 |
aaagggcacgatagtcacgtgagacgtcagagacgacgtagtcacgtaggtaactgccagtggcaaagttttggaggtgtttgtaagcggatggagggtg |
4195335 |
T |
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| Q |
119 |
gaaagcgaggaatgcatcggtgacatcttggccggcgaggttgaggagaggaagctcgccgccgggatggtggttggcccattttgaaacgtcgtagatc |
218 |
Q |
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| T |
4195334 |
gaaagcgaggaatgcatcggtgacatcttggccggcgaggttgaggagaggaagctcgccgccgggatggtggttggcccattttgaaacgtcgtagatc |
4195235 |
T |
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| Q |
219 |
ttgccgtcaatggagatccatgcatcgccgcgagtgttgtgtttttgaagttcttgcaatgaaatgtaggttggttttagcaacggttcagtttgtgtta |
318 |
Q |
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| T |
4195234 |
ttgccgtcaatggagatccatgcatcgccgcgagtgttgtgtttttgaagttcttgcaatgaaatgtaggttggttttagcaacggttcagtttgtgtta |
4195135 |
T |
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| Q |
319 |
ccattgtgta |
328 |
Q |
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| T |
4195134 |
ccattgtgta |
4195125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 4186310 - 4186190
Alignment:
| Q |
111 |
ggagggtggaaagcgaggaatgcatcggtgacatcttggccggcgaggttgaggagaggaagctcgccgccgggatggtggttggcccattttgaaacgt |
210 |
Q |
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| T |
4186310 |
ggagggtggaaagcaaggaatgcttcagtaacctcttggccggcaaggctgattagagggaattcgccaccgggatggtggttggcccatttagagacgt |
4186211 |
T |
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| Q |
211 |
cgtagatcttgccgtcaatgg |
231 |
Q |
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| T |
4186210 |
cgtatatcttgccgtcaatgg |
4186190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 4186180 - 4186137
Alignment:
| Q |
253 |
tgttgtgtttttgaagttcttgcaatgaaatgtaggttggtttt |
296 |
Q |
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| T |
4186180 |
tgttgtgtttttggagttcttgcagtgaaatgtaggttggtttt |
4186137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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