View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19872_low_14 (Length: 367)
Name: NF19872_low_14
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 44635858 - 44636199
Alignment:
| Q |
17 |
aggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635858 |
aggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacag |
44635957 |
T |
|
| Q |
117 |
cagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635958 |
cagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacatt |
44636057 |
T |
|
| Q |
217 |
aactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagactcagcctcaccc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44636058 |
aactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagattcagcctcaccc |
44636157 |
T |
|
| Q |
317 |
tcggctcgctttacttgcaagatcttctctgcctctgccttt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44636158 |
tcggctcgctttacttgcaagatcttctctgcctctgccttt |
44636199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 44693380 - 44693041
Alignment:
| Q |
18 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagc |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
44693380 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44693281 |
T |
|
| Q |
118 |
agaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacatta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |
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|
| T |
44693280 |
agaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttggccctggtacattc |
44693181 |
T |
|
| Q |
218 |
actgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagactcagcctcaccct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
44693180 |
tctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcctcaccct |
44693081 |
T |
|
| Q |
318 |
cggctcgctttacttgcaagatcttctctgcctctgcctt |
357 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| || ||||| |
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|
| T |
44693080 |
cggctcgctttatttgcaagattttctctgcttcagcctt |
44693041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 44632983 - 44632650
Alignment:
| Q |
18 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
44632983 |
ggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagc |
44632884 |
T |
|
| Q |
118 |
agaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacatta |
217 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
44632883 |
agaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacatta |
44632784 |
T |
|
| Q |
218 |
actgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagactcagcctcaccct |
317 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||| |
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|
| T |
44632783 |
accgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccct |
44632684 |
T |
|
| Q |
318 |
cggctcgctttacttgcaagatcttctctgcctc |
351 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
44632683 |
cggctcgctttatttgcaagatcttctctgcctc |
44632650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 39 - 357
Target Start/End: Complemental strand, 44654828 - 44654510
Alignment:
| Q |
39 |
gagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcacc |
138 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
44654828 |
gagaaccctggagaagtccatcacgaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcacc |
44654729 |
T |
|
| Q |
139 |
aatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
44654728 |
aatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactg |
44654629 |
T |
|
| Q |
239 |
tctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagactcagcctcaccctcggctcgctttacttgcaaga |
338 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
44654628 |
tctctcaaaccatccacaatcgcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaaga |
44654529 |
T |
|
| Q |
339 |
tcttctctgcctctgcctt |
357 |
Q |
| |
|
| |||||||| || ||||| |
|
|
| T |
44654528 |
ttttctctgcttcagcctt |
44654510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 39 - 357
Target Start/End: Complemental strand, 44683627 - 44683309
Alignment:
| Q |
39 |
gagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcacc |
138 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
44683627 |
gagaaccctggagaagtccatcacgaatttgactagctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagcccc |
44683528 |
T |
|
| Q |
139 |
aatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
44683527 |
aatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactg |
44683428 |
T |
|
| Q |
239 |
tctctcaaaccatccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagactcagcctcaccctcggctcgctttacttgcaaga |
338 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
44683427 |
tctctcaaaccatccacaatggcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaaga |
44683328 |
T |
|
| Q |
339 |
tcttctctgcctctgcctt |
357 |
Q |
| |
|
| |||||||| || ||||| |
|
|
| T |
44683327 |
ttttctctgcttcagcctt |
44683309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 44625694 - 44625430
Alignment:
| Q |
18 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagc |
117 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44625694 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44625595 |
T |
|
| Q |
118 |
agaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacatta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
44625594 |
agaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacatta |
44625495 |
T |
|
| Q |
218 |
actgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
44625494 |
actgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 3205311 - 3205115
Alignment:
| Q |
86 |
acagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccaaatcca |
185 |
Q |
| |
|
||||||||||| || |||||||||||||||| || ||||| |||| ||||||||||| ||||| ||||| ||||||||||| || | |||| |||| |
|
|
| T |
3205311 |
acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtcca |
3205212 |
T |
|
| Q |
186 |
tgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacgagcaatacc |
282 |
Q |
| |
|
|||||||||||||| |||| || || ||||| |||| ||| ||| ||| |||||||||| || || ||||| ||||||||||| ||||| ||||| |
|
|
| T |
3205211 |
tgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctatacc |
3205115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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