View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_15 (Length: 312)
Name: NF19872_low_15
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 23434162 - 23434458
Alignment:
| Q |
14 |
agaaaaaataaagaaaataaactggaacgtgaatgtgtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtga |
113 |
Q |
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| T |
23434162 |
agaaaaaataaagaaaataaacaggaacgtgaatgtgtggagaaaatgccattgagggagatgaagattaagggatagagtgtgactcaatttgtagtga |
23434261 |
T |
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| Q |
114 |
ctaattaaatgctaaccgttgatgtgtatctgaaggttattaatgattcctctcatctctcacattaacttcttcactcatttgatatattctctacgtg |
213 |
Q |
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| T |
23434262 |
ctaattaaatgctaaccgttgatgtgtatctgatggttattaatgattcctctcatctctcacattaacttcttcactcatttgatatattctctac--g |
23434359 |
T |
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| Q |
214 |
tgtgtgtatctatatatcttactattttattttgacaaaatttgtgacaatattactgcatatgtgttccacgaatttctattattggcatgaccatat |
312 |
Q |
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| T |
23434360 |
tgtgtgtatctatatatcttactattttattttgacaaaatttgtgacaatgttactgcatatgtgttccacgaatttctattattggcatgaccatat |
23434458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 19638754 - 19638882
Alignment:
| Q |
50 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
149 |
Q |
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| T |
19638754 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatctgatgg |
19638853 |
T |
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| Q |
150 |
ttattaatgattcctctca-tctctcaca |
177 |
Q |
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| T |
19638854 |
ttattaattattcctctcactctctcaca |
19638882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 14099137 - 14099297
Alignment:
| Q |
50 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
149 |
Q |
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|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| ||||||| |||||||||| | ||| || || |
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| T |
14099137 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatcagatgg |
14099236 |
T |
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| Q |
150 |
ttattaatgattcctctca-tctctcacattaacttcttcactcatttgatatattctcta |
209 |
Q |
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| T |
14099237 |
ttattaattattcctctcactctctcacaataaatactcctctcacttgatatgttctcta |
14099297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 20509267 - 20509384
Alignment:
| Q |
50 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
149 |
Q |
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| T |
20509267 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatctgatgg |
20509366 |
T |
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| Q |
150 |
ttattaatgattcctctc |
167 |
Q |
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| T |
20509367 |
ttattaattattcctctc |
20509384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 30785527 - 30785644
Alignment:
| Q |
50 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
149 |
Q |
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|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| |||||| |||||||||| | |||||| || |
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| T |
30785527 |
gtggagaatatgtcaggaagggagatgaagattgagggatatagtgtgactaagtctgtagtgactaactaaatgtcaaccgttgatatagatctgatgg |
30785626 |
T |
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| Q |
150 |
ttattaatgattcctctc |
167 |
Q |
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|||||||| ||||||||| |
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| T |
30785627 |
ttattaattattcctctc |
30785644 |
T |
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