View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19872_low_16 (Length: 269)
Name: NF19872_low_16
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 30464051 - 30463810
Alignment:
| Q |
18 |
atgacgccgatgaattcatctctgattcctcgccgttagcgctaacggagaactcagcaaacatctctggatccatctccaaatccggcaagatgtctcc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30464051 |
atgacgccgacgaattcatctctgattcctcgccgttagcgctaacggagaactcagcaaacatctctggatccatctccaaatccggcaagatgtctcc |
30463952 |
T |
|
| Q |
118 |
atcgatgttgatgccaacaaagaagtcgtcgaagttgatgctttccaataaatttccttcggaaaggtcgccaaagtcaccggttgtaattgtagtactc |
217 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30463951 |
atccacgttgatgccaacaaagaagtcgtcgaagttgatgctttccaataaatttccttcggaaaggtcgccaaagtcaccagttgtaattgtagtactc |
30463852 |
T |
|
| Q |
218 |
cccattgaaaaactctccatctcttcttggcttccacctttg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30463851 |
cccattgaaaaactctccatctcttcttggcttccatctttg |
30463810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University