View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_19 (Length: 251)
Name: NF19872_low_19
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 30709679 - 30709928
Alignment:
| Q |
2 |
ctttcttagtagcttcacttcatttctctaaaaatctagaaacattacatatcttgaaatgtatctcttaaattttcacaatttccaataatatttggaa |
101 |
Q |
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| T |
30709679 |
ctttcttagtagcttcacttcatttctctaaaaatctagaaacatttcatatcttgaaatgtatctcttaaattttcacaatttccaataatatttggaa |
30709778 |
T |
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| Q |
102 |
attataattgatttcattttattccttaattctttttatgatgtgtaatttaatcatgcaacatgtttagttcgatataaacttaattttgaactattta |
201 |
Q |
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| T |
30709779 |
attataattgatttcattttattccttaattatttttatgatgtgtaatttaatcatgcaacatg-ttagttcgatataaacttaattttgaactattta |
30709877 |
T |
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| Q |
202 |
ttaaatcagaaaggtttactctaata-attactttctaacatgagaatcac |
251 |
Q |
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| T |
30709878 |
ttaaatcagaaaggtttacacatatatattactatctaacatgagaatcac |
30709928 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 23975968 - 23976037
Alignment:
| Q |
10 |
gtagcttcacttcatttctctaaaaatctagaaacat---tacatatcttgaaatgtatctcttaaattt |
76 |
Q |
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|||||||| |||||||||||||| |||| ||| |||| | ||| |||||||||||||||||||||||| |
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| T |
23975968 |
gtagcttctcttcatttctctaagaatcgagatacatcccttcatctcttgaaatgtatctcttaaattt |
23976037 |
T |
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