View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_20 (Length: 249)
Name: NF19872_low_20
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28599693 - 28599456
Alignment:
| Q |
1 |
aatataatatttttattcatgtgctcttaaccaatgccctaaaaacacttgttaacatttcccatatctaaattacctgacgtttaaaaaacaacataga |
100 |
Q |
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| T |
28599693 |
aatataatatttttattcatgtgctcttaaccaatgccctaaaaacacttgttaacatttctcatatctaaattacccgacgtttgaaaaacaacgtaga |
28599594 |
T |
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| Q |
101 |
aacattaagcaatactataaactattctaaaggtnnnnnnnnttatgtgaaaaacattgaaactagataaattcaatcaacttcaacacctaaattcaat |
200 |
Q |
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| T |
28599593 |
aacattaagcaatactat-aactattctaaaggaaaaaaaaattatgtgaaaaacattgaaactagataaattcaatcaacttcaacacctaaattcaat |
28599495 |
T |
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| Q |
201 |
acctttgaaataatctatgtgttgttcaaggtgtttcat |
239 |
Q |
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| T |
28599494 |
acctttgaaataatctctgtgttgttcaagatgtttcat |
28599456 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 28188726 - 28188762
Alignment:
| Q |
27 |
ttaaccaatgccctaaaaacacttgttaacatttccc |
63 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
28188726 |
ttaaacaatgccctaaaaacacttgttaatatttccc |
28188762 |
T |
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