View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19872_low_5 (Length: 713)

Name: NF19872_low_5
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19872_low_5
NF19872_low_5
[»] chr3 (4 HSPs)
chr3 (16-692)||(30179018-30179694)
chr3 (206-416)||(4649914-4650123)
chr3 (309-420)||(35079975-35080087)
chr3 (43-115)||(30178819-30178891)
[»] chr2 (8 HSPs)
chr2 (16-462)||(13067570-13068015)
chr2 (158-486)||(25714753-25715080)
chr2 (206-486)||(25857499-25857778)
chr2 (238-384)||(25714595-25714739)
chr2 (27-149)||(25859188-25859310)
chr2 (160-243)||(25857779-25857862)
chr2 (127-176)||(25859240-25859289)
chr2 (158-187)||(25859380-25859409)
[»] chr1 (3 HSPs)
chr1 (206-491)||(18424600-18424885)
chr1 (14-105)||(18424983-18425075)
chr1 (166-219)||(18424948-18425001)
[»] scaffold0078 (4 HSPs)
scaffold0078 (206-491)||(13230-13515)
scaffold0078 (14-225)||(12962-13173)
scaffold0078 (43-105)||(12840-12902)
scaffold0078 (127-187)||(12845-12905)
[»] chr6 (5 HSPs)
chr6 (206-486)||(16690544-16690824)
chr6 (168-243)||(16690468-16690543)
chr6 (43-105)||(16690271-16690333)
chr6 (14-105)||(16690393-16690484)
chr6 (130-187)||(16690279-16690336)
[»] chr4 (1 HSPs)
chr4 (33-283)||(38431809-38432057)
[»] chr8 (1 HSPs)
chr8 (210-460)||(32116015-32116267)


Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 16 - 692
Target Start/End: Original strand, 30179018 - 30179694
Alignment:
Q  16 tattctaaagctgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattatata 115  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30179018 tattctaaagctgatatattatgtgtgaaaattaaagctcagtgttgataggattactatgtcggtgatcaacactattttggagctgagatattatata 30179117  T
Q  116 cacatgaaatatagagctcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataattt 215  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30179118 cacatgaaatatagagctcaatgttaatatgatctttatgttggtgatcaacactattttggagttgaggcagtgtggttttccgtgaaccacataattt 30179217  T
Q  216 ctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgctacactctac 315  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30179218 ctctggctttgaagcattggagagaaattgaggactgacatagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgctacactctac 30179317  T
Q  316 acaaatgactagtcaacggaattgatggtatttgtaa-tcatggaaggtgttgtatcaataaggatataactacagccataattcgatatcatttaattt 414  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30179318 acaaatgactagtcgacggaattgatggtatttgtaacccatggaaggtgttgtatcaataaggatataactaccgccataattcgatatcatttaattt 30179417  T
Q  415 ttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggctacattagtaagcttgttatcggtccccgtgaaaggcaaaggaagactt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30179418 ttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggccacattagaaagcttgttatcggtccccgtgaaaggcaaaggaagactt 30179517  T
Q  515 tgtcttagatctcggtaatcatgactatggcttcatcaattaaaaagtaaatgtgttcaaatttcatataataggtgatttaaattttacaagaaaatcc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30179518 tgtcttagatctcggtaatcatgactatggcttcatcaattaaaaagtaaatgtgttcaaatttcatataataggtgatttaaattttacaagaaaatcc 30179617  T
Q  615 taaaccctcaaattttgttgcactaacggcttcaagcgaacttaactccttactccgcaacaaccaccacggctgccc 692  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  30179618 taaaccctcaaattttgtt-cacttacggcttcaagcgaacttaactccttactccacaacaaccaccacagctgccc 30179694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 206 - 416
Target Start/End: Complemental strand, 4650123 - 4649914
Alignment:
Q  206 cacataatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgc 305  Q
    |||||||||||||||||||| | ||||| |||||||||||||||| || ||  |||| || | |||| | | |||||||||||||||||||||| |||||    
T  4650123 cacataatttctctggctttaagacattagagagaaattgaggaccgaaaataaaaaggaaaatatggtcgatgatcacgttgacatatcattt-cttgc 4650025  T
Q  306 tacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatcaataaggatataactacagccataattcgatatc 405  Q
    |||||||||||||||||||||||| ||| ||||  || ||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  4650024 tacactctacacaaatgactagtcgacgaaatttgtgatatttgtaaccatggaaggtgttctatcaataaggatataactaccgccatgattcgatatc 4649925  T
Q  406 atttaattttt 416  Q
    ||| |||||||    
T  4649924 attcaattttt 4649914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 420
Target Start/End: Original strand, 35079975 - 35080087
Alignment:
Q  309 actctacacaaatgactagtcaacggaattgatggta--tttgtaatcatggaaggtgttgtatcaataaggatataactacagccataattcgatatca 406  Q
    |||||| |||||||||||||||| | | ||| |||||  ||||||| |||| || | ||||||| ||||| ||||||||||| ||||| ||||  | |||    
T  35079975 actctatacaaatgactagtcaatgaagttggtggtaaatttgtaaccatgaaatgcgttgtat-aataaagatataactaccgccatgattcattgtca 35080073  T
Q  407 tttaatttttgttg 420  Q
    ||||||||||||||    
T  35080074 tttaatttttgttg 35080087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 30178819 - 30178891
Alignment:
Q  43 aaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattatata 115  Q
    ||||||| |||| | |||||||||||||||| |||| |||||| |||||||||| || |||||  ||||||||    
T  30178819 aaaattaaagctcattgttgataggatcactttgtcagtgatcgacactattttagaactgaggcattatata 30178891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 13068015 - 13067570
Alignment:
Q  16 tattctaaagctgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattatata 115  Q
    ||||||| ||||||||||||||||||||||||||||| | |||||| ||| |||||||||||   ||||||| |||||||||||||||| | || |||||    
T  13068015 tattctagagctgatatattatgtgtgaaaattagagttcagtgttaatatgatcactatgttaatgatcaatactattttggagctgaaacataatata 13067916  T
Q  116 cacatgaaatatagagctcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataattt 215  Q
    || ||||||  || |||||||||||||||| ||| |||||| | | |||||||||||||| ||| |||| || |||||||||| ||||      ||| ||    
T  13067915 catatgaaaactatagctcagtgttaatagaatcactatgtcgataatcaacactattttagagctgagacaatgtggttttccgtga------taactt 13067822  T
Q  216 ctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcat--tttcttgctacactct 313  Q
    ||||||||||||  |||||||||||||||||||||| |||||||  ||||||||||| ||| ||||||||||||||||||||   ||||||| |||||||    
T  13067821 ctctggctttgaggcattggagagaaattgaggactaacaaagacgatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactct 13067722  T
Q  314 acacaaatgactagtcaacggaattgatggtatttgtaa--tcatggaaggtgttgtatcaataaggatataactacagccataattcgatatcatttaa 411  Q
     ||||||||| | ||| ||| ||||| |||||||||| |   ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  13067721 gcacaaatgattcgtcgacgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactaccgccatgattcgatatcatttaa 13067622  T
Q  412 -tttttgttggatggagccttaattaagtgtcgcatcttgagatcatttagt 462  Q
     |||||||||| ||||| |||||| || ||| ||||||||||||||||||||    
T  13067621 ttttttgttgggtggagtcttaatcaaatgttgcatcttgagatcatttagt 13067570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 158 - 486
Target Start/End: Original strand, 25714753 - 25715080
Alignment:
Q  158 ggtgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataatttctctggctttgaaacattggagagaaattgaggactgacaaa 257  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |  |||||||||  |||| || |||||||||||||||| ||     
T  25714753 ggtgatcaacactatcttggagttgaggcagtgtggtttttcgtgaaccacataattccg-tggctttgaggcatttgaaagaaattgaggactgataat 25714851  T
Q  258 gaaaatgatagtatgattggtgatcacgttgacatatcattttcttgctacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatg 357  Q
    ||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |  |||||| || ||||    
T  25714852 gaaaatgatagcatggttgatgatcacattgacatatcattt-cttgctacactatacacaaatgactagtcgacggaattggttatatttgcaaccatg 25714950  T
Q  358 gaaggtgttgtatcaataaggatataactacagccataattcgatatcatttaa-tttttgttggatggagccttaattaagtgtcgcatcttgagatca 456  Q
    |||| ||||||||| |||||||||||||||  ||||| |||| ||||||||||| ||||||||||||| || ||||||||||||| |||||||| |||||    
T  25714951 gaagatgttgtatctataaggatataactattgccatgattcaatatcatttaattttttgttggatgaagtcttaattaagtgttgcatcttgggatca 25715050  T
Q  457 tttagtggctacattagtaagcttgttatc 486  Q
    || |||||| || |||| ||| ||||||||    
T  25715051 ttcagtggccacgttaggaagtttgttatc 25715080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 206 - 486
Target Start/End: Complemental strand, 25857778 - 25857499
Alignment:
Q  206 cacataatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgc 305  Q
    |||||| ||| ||||||||| |  |||| |||||||||||||||| |||||  |||||||||||||| ||| |||||||||||||||||| ||| |||||    
T  25857778 cacatattttatctggctttaaggcatttgagagaaattgaggaccgacaattaaaatgatagtatggttgatgatcacgttgacatatcgttt-cttgc 25857680  T
Q  306 tacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatcaataaggatataactacagccataattcgatatc 405  Q
    ||||| ||||||||||||| |||| ||||||||| || |||||| || ||||||||||||||||||||||||||||||| ||| ||||| |||| |||||    
T  25857679 tacacactacacaaatgacaagtcgacggaattggtgatatttggaaccatggaaggtgttgtatcaataaggatataattaccgccatgattcaatatc 25857580  T
Q  406 atttaatttttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggctacattagtaagcttgttatc 486  Q
    ||| | ||||||||||| |||| ||||||||||||| |||||||| |||||||||| ||| |  |||| ||| ||||||||    
T  25857579 attcagtttttgttggaaggagtcttaattaagtgttgcatcttgggatcatttagcggccatgttaggaagtttgttatc 25857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 25714595 - 25714739
Alignment:
Q  238 agaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgctacactctacacaaatgactagtcaacggaat 337  Q
    ||||||||||||| || || ||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  25714595 agaaattgaggaccgataatgaaaatgatagcatggttgatgatcacattgacatatcattt-cttgctacactatacacaaatgactagtcgacggaat 25714693  T
Q  338 tgatggtatttgtaatcatggaaggtgttgtatcaataaggatataa 384  Q
    || || |||||| || ||||||||||||||||||  |||||||||||    
T  25714694 tggtgatatttgcaaccatggaaggtgttgtatc-ttaaggatataa 25714739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 25859310 - 25859188
Alignment:
Q  27 tgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattatatacacatgaaata 126  Q
    |||| |||||||||| |||||||||||| | |||| |||| |||||||||||||||||||||||||||||| |||||||| |||||||  |||||||||     
T  25859310 tgatgtattatgtgtaaaaattagagctcattgttaatagtatcactatgtcggtgatcaacactattttgaagctgagacattatatcaacatgaaatt 25859211  T
Q  127 tagagctcagtgttaataggatc 149  Q
    ||||||| ||||||||| |||||    
T  25859210 tagagcttagtgttaatgggatc 25859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 25857862 - 25857779
Alignment:
Q  160 tgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataatttctctggctttgaaacattggagagaaat 243  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |  |||| |||||||||    
T  25857862 tgatcaacattatttttgagttgaggcagtgtggttttctttgaaccacataatttctctgactttaaggcatttgagagaaat 25857779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 25859289 - 25859240
Alignment:
Q  127 tagagctcagtgttaataggatctctatgttggtgatcaacactattttg 176  Q
    ||||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  25859289 tagagctcattgttaatagtatcactatgtcggtgatcaacactattttg 25859240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 25859409 - 25859380
Alignment:
Q  158 ggtgatcaacactattttggagttgaggca 187  Q
    ||||||||||||||||||||||||||||||    
T  25859409 ggtgatcaacactattttggagttgaggca 25859380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 5e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 206 - 491
Target Start/End: Complemental strand, 18424885 - 18424600
Alignment:
Q  206 cacataatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgc 305  Q
    |||||||||||||| ||||| | |||||| ||||||||| ||||| ||||| ||||||||||||||| | | |||||||||||||||||||||| |||||    
T  18424885 cacataatttctcttgctttaagacattg-agagaaattaaggaccgacaatgaaaatgatagtatggtcgatgatcacgttgacatatcattt-cttgc 18424788  T
Q  306 tacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatca-ataaggatataactacagccataattcgatat 404  Q
    ||| ||||||||| || ||||||| ||||||||| || ||||||||| |||||||||||| ||||||  ||||||||||||||| ||||| |||||||||    
T  18424787 tacgctctacacagataactagtcgacggaattggtgatatttgtaaccatggaaggtgtggtatcagttaaggatataactaccgccatgattcgatat 18424688  T
Q  405 cattta-atttttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggctacattagtaagcttgttatcggtcc 491  Q
    | || |  |||||||||||||||| ||||||||||||| ||||| || |||||| |||||||  |||||  ||| |||||||| ||||    
T  18424687 ctttcagttttttgttggatggagtcttaattaagtgttgcatcatgggatcatgtagtggcctcattaagaagtttgttatcagtcc 18424600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 18425075 - 18424983
Alignment:
Q  14 attattctaaagctgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcg-gtgatcaacactattttggagctgag 105  Q
    ||||||||  ||||||| |||||||||| |||||||||| | ||||| | | |||||||||||||| |||||  |||||||||||||||||||    
T  18425075 attattcttgagctgatgtattatgtgtaaaaattagagatcagtgtcgttgggatcactatgtcgtgtgattgacactattttggagctgag 18424983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 18425001 - 18424948
Alignment:
Q  166 acactattttggagttgaggcagtgtggttttctgtgaaccacataatttctct 219  Q
    |||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||    
T  18425001 acactattttggagctgaggcaatgtgattttctgtggaccacataatttctct 18424948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 206 - 491
Target Start/End: Original strand, 13230 - 13515
Alignment:
Q  206 cacataatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatcacgttgacatatcattttcttgc 305  Q
    |||| ||||||||||||||| || ||||| |||||||||||||||  |||| ||||||||||||||| | | ||||||||||||||||||| ||||||||    
T  13230 cacacaatttctctggctttaaagcattg-agagaaattgaggaccaacaatgaaaatgatagtatggtcgatgatcacgttgacatatca-tttcttgc 13327  T
Q  306 tacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatcaa-taaggatataactacagccataattcgatat 404  Q
    || |||||||||| |||||||||  ||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||| ||||| |||||| ||    
T  13328 taaactctacacagatgactagttgacggaattggtgatatttgtaaccatggaaggtattgtatcaattaaggatataactaccgccatgattcgaaat 13427  T
Q  405 catttaatt-tttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggctacattagtaagcttgttatcggtcc 491  Q
    |||| | || || |||||| |||| ||| ||||||||| ||||| || |||||| ||||||| || |||| ||| |||||||| ||||    
T  13428 cattcagttcttagttggacggagtctttattaagtgttgcatcatgggatcatgtagtggccacgttaggaagtttgttatcagtcc 13515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 12962 - 13173
Alignment:
Q  14 attattctaaagctgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattata 113  Q
    ||||||||  |||| || |||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  12962 attattctggagctaatgtattatgtatgaaaattagagctcagtgttcatagtatcactatgtcggtgatcaacactattttggagctgacacattata 13061  T
Q  114 tacacatgaaatatagagctcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataat 213  Q
    ||||||| |||| ||||||||||||| | | ||||| |||||   |||||| || ||||||||||| ||||||| ||| |||||| ||| ||||||||||    
T  13062 tacacataaaatttagagctcagtgtcattgggatcactatgccagtgatcgacgctattttggagctgaggcaatgtcgttttccgtggaccacataat 13161  T
Q  214 ttctctggcttt 225  Q
    ||||||||||||    
T  13162 ttctctggcttt 13173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 12840 - 12902
Alignment:
Q  43 aaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgag 105  Q
    |||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| ||||    
T  12840 aaaattagagctcagtgtcgttaggatcactatgtcggtgatcgacactattttggagatgag 12902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 12845 - 12905
Alignment:
Q  127 tagagctcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggca 187  Q
    |||||||||||||   ||||||| |||||| ||||||| |||||||||||||| |||||||    
T  12845 tagagctcagtgtcgttaggatcactatgtcggtgatcgacactattttggagatgaggca 12905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 7e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 206 - 486
Target Start/End: Original strand, 16690544 - 16690824
Alignment:
Q  206 cacataatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtat-gattggtgatcacgttgacatatcattttcttg 304  Q
    |||||||||||||||| ||| |  ||||| ||||||||||||||| ||| | ||||||||||| || | | | |||||||||||||||||||||| ||||    
T  16690544 cacataatttctctgg-tttaaggcattg-agagaaattgaggaccgacgatgaaaatgatagaattggtcgatgatcacgttgacatatcattt-cttg 16690640  T
Q  305 ctacactctacacaaatgactagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatcaa-taaggatataactacagccataattcgata 403  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||||||||| ||||| ||||||||||||||| || || ||||||||    
T  16690641 ctacactctacacaaatgactagtcgacggaattggtgatatttgtaaccatggaaggtgttgcatcaattaaggatataactaccgctatgattcgata 16690740  T
Q  404 tcatttaatt-tttgttggatggagccttaattaagtgtcgcatcttgagatcatttagtggctacattagtaagcttgttatc 486  Q
    || || | || || |||||| |||| ||||||||||||| ||||| || |||||| ||| ||| ||||||| ||| ||||||||    
T  16690741 tctttcagttcttagttggaaggagtcttaattaagtgttgcatcatgggatcatgtagcggccacattaggaagtttgttatc 16690824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 16690468 - 16690543
Alignment:
Q  168 actattttggagttgaggcagtgtggttttctgtgaaccacataatttctctggctttgaaacattggagagaaat 243  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| |  |||| |||||||||    
T  16690468 actattttggagctgaggcaatgtggttttccgtgaaccacataatttctctggctttaaggcatttgagagaaat 16690543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 16690271 - 16690333
Alignment:
Q  43 aaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgag 105  Q
    ||||||| |||| |||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  16690271 aaaattaaagctcagtgttgaaaggatcactatgccggtgatcgacactattttggagctgag 16690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 16690393 - 16690484
Alignment:
Q  14 attattctaaagctgatatattatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgag 105  Q
    ||||||||  ||||||| ||| |||||||||| ||| |||| ||||| | | ||||||||||| |||| ||  | |||||||||||||||||    
T  16690393 attattctggagctgatgtataatgtgtgaaatttaaagctcagtgtcgttgggatcactatgccggtaattgaaactattttggagctgag 16690484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 16690279 - 16690336
Alignment:
Q  130 agctcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggca 187  Q
    ||||||||||| | |||||| |||||  ||||||| |||||||||||||| |||||||    
T  16690279 agctcagtgttgaaaggatcactatgccggtgatcgacactattttggagctgaggca 16690336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 38431809 - 38432057
Alignment:
Q  33 attatgtgtgaaaattagagcttagtgttgataggatcactatgtcggtgatcaacactattttggagctgagatattatatacacatgaaatatagagc 132  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||||||| ||||||  |||||     
T  38431809 attatgtgtgaatattagagtttagtgttaataggatcactatgttgatgatcaacactactttggagctgagacattatatacatatgaaaactagagt 38431908  T
Q  133 tcagtgttaataggatctctatgttggtgatcaacactattttggagttgaggcagtgtggttttctgtgaaccacataatttctctggctttgaaacat 232  Q
    | |||||||||    || |||||| ||   |||||||||||||| || ||||||||||||||||  || ||| || ||||||||||||  || ||  |||    
T  38431909 ttagtgttaatctattcactatgtcggcagtcaacactattttgaagctgaggcagtgtggtttcttgcgaagcatataatttctctgagttcgaggcat 38432008  T
Q  233 tggagagaaattgaggactgacaaagaaaatgatagtatgattggtgatca 283  Q
    |||||||||||||||||| |||||||  ||| |||||||||||| ||||||    
T  38432009 tggagagaaattgaggaccgacaaag--aataatagtatgattgatgatca 38432057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 210 - 460
Target Start/End: Complemental strand, 32116267 - 32116015
Alignment:
Q  210 taatttctctggctttgaaacattggagagaaattgaggactgacaaagaaaatgatagtatgattggtg-atcacgttgacatatcattttcttgctac 308  Q
    |||||||||| | || || ||||| || ||||||| | || ||||||||| |||||||||||||||| || |||| |||||||||||||||| || ||||    
T  32116267 taatttctcttgtttcgagacatttgacagaaattcatgagtgacaaagagaatgatagtatgattgatggatcaagttgacatatcattttttttctac 32116168  T
Q  309 actctacacaaatga--ctagtcaacggaattgatggtatttgtaatcatggaaggtgttgtatcaataaggatataactacagccataattcgatatca 406  Q
    |||||||   ||||   ||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||   |||  |||| ||||||    
T  32116167 actctacttgaatgtggctaatcgacggaattgatgatatttgtaaccatggaaggtgttgtatcaataaggatataactatcaccaagattcaatatca 32116068  T
Q  407 tttaatttttgttggatggagccttaattaagtgtcgcatcttgagatcattta 460  Q
    ||||| ||||||||||||||| |||| ||| |||| |||||||  |||||||||    
T  32116067 tttaa-ttttgttggatggagtcttatttaggtgttgcatcttaggatcattta 32116015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University