View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_6 (Length: 588)
Name: NF19872_low_6
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 154 - 571
Target Start/End: Original strand, 41166609 - 41167028
Alignment:
| Q |
154 |
caaaacgtgacttaatacgttcatactttttatatatactataggagtgtgtcacgtaaatgaaaataaataaattttaaaaatcttgtatagnnnnnnn |
253 |
Q |
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| T |
41166609 |
caaaacgtgacttaatacgttcatactttttatatatactataggagtgtgtcacgtaaatgaaaataaataaattttaaaaatcttgtatagttttttt |
41166708 |
T |
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| Q |
254 |
nn-ctttcaatcatgaacattgaggcaaaggtgttaaatttacatataaactgcattaaatgttttggatttgatccttttgaattgattggttttcttc |
352 |
Q |
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| T |
41166709 |
tttctttcaatcatgaacattgaggcaaaggtgttaaatttacatataaactgcattaaatgttttggatttgatccttttgaattgattggttttcttc |
41166808 |
T |
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| Q |
353 |
atcatctgggtttgtttagatttgagctcaagtactttgatcctttccttgtcttggatgaattctcaggtgagaaactctgttttttgctctgttttgt |
452 |
Q |
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| T |
41166809 |
atcatctgggtttgtttagatttgagctcaagtactttgatcctttccttgtcttggatgaattctcaggtgagaaactctgttttttgctctgttttgt |
41166908 |
T |
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| Q |
453 |
atgttcaaaatgagagtcatgatta-nnnnnnnagtagaaaattagagtcataatcttgttttgttttctaaaaatgtgaattattgcagttgctgctcc |
551 |
Q |
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| T |
41166909 |
atgttcaaaatgagagtcatgattattttttttagtagaaaattagagtcataatcttgttttgttttctaaaaatgtgaaatattgcagttgctgctcc |
41167008 |
T |
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| Q |
552 |
ttctggatttcctgatcatc |
571 |
Q |
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| T |
41167009 |
ttctggatttcctgatcatc |
41167028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 41166467 - 41166509
Alignment:
| Q |
9 |
agaagcataggaaggtaattaattcaaagtgcagtccaacaaa |
51 |
Q |
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| T |
41166467 |
agaagcataggaaggtaattaattcaaagttcagtccaacaaa |
41166509 |
T |
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