View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_7 (Length: 545)
Name: NF19872_low_7
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 262 - 545
Target Start/End: Original strand, 34133152 - 34133435
Alignment:
| Q |
262 |
ctatcaacacaacccaacatgagactttcaacaatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
361 |
Q |
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| T |
34133152 |
ctatcaacacaacccaacatgagactttcaacgatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
34133251 |
T |
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| Q |
362 |
gtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
461 |
Q |
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| T |
34133252 |
gtccattgaataacaccatcatcatgttcatcagaactccgaggaactaatgtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
34133351 |
T |
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| Q |
462 |
ttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcctccaaactctgagcaa |
545 |
Q |
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| T |
34133352 |
ttttggtatgctctgtatcataataaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaa |
34133435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 34131776 - 34132035
Alignment:
| Q |
18 |
caaataagtaataataaagaatgatccaaagtatttaaggtagactctcacattatcataaaatttagattgggtctaactcaaa--------ttcaact |
109 |
Q |
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| T |
34131776 |
caaataagtaataacaaagaatgatccaaagtatttaaggtagactctcacattatcataaaatttagattgagtctaactcaaatccacaaattcaact |
34131875 |
T |
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| Q |
110 |
tagacggtgtcggatactcaccacttatgaacaaattttgggtctataacgtccaatctgttaacttctatctaattcatacataactgtcatatttata |
209 |
Q |
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| T |
34131876 |
tagacggtgttgaatactcaccacttatgaacaaattttgggtctatcacgtccaatctgttaacttctatctaattcatacataactgtcatatttata |
34131975 |
T |
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| Q |
210 |
gagatcaattgcaacaaattcccaagtcctaactactggacataattatttactatcaac |
269 |
Q |
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| T |
34131976 |
gagatcaattgcaacaaattcctaagtcctaactactggacataattatttactatcaac |
34132035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 323 - 545
Target Start/End: Original strand, 34137124 - 34137346
Alignment:
| Q |
323 |
aactacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatctt |
422 |
Q |
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| T |
34137124 |
aactacctgaagtgtgaagggaattgtggggatggattagaccattgaataaattgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgt |
34137223 |
T |
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| Q |
423 |
gagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttctt |
522 |
Q |
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| T |
34137224 |
tggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaaccttcct |
34137323 |
T |
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| Q |
523 |
cttctcctccaaactctgagcaa |
545 |
Q |
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| T |
34137324 |
cttctcctccaaactctgagcaa |
34137346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 430 - 545
Target Start/End: Original strand, 34140894 - 34141009
Alignment:
| Q |
430 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcc |
529 |
Q |
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| T |
34140894 |
aaaatcaaacacttctttcatgtctctaacattcttggtgagttcagtgtcataataaccagttggaatgatctcatctctagcaaccttcttcttctcc |
34140993 |
T |
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| Q |
530 |
tccaaactctgagcaa |
545 |
Q |
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| T |
34140994 |
tccaaactctgagcaa |
34141009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 325 - 545
Target Start/End: Original strand, 34126942 - 34127162
Alignment:
| Q |
325 |
ctacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttga |
424 |
Q |
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| T |
34126942 |
ctacctgaattttggaggatacttaggggacggattagaccattgaataacttgatcatcattttcatcacaattcagaggaaccaaagtgggatctctg |
34127041 |
T |
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| Q |
425 |
gaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttct |
524 |
Q |
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| | |||||||||||||||| |||||| ||| ||||| ||||| |||||| ||||| |||||||| | || ||||||||||||| ||||||||| | | |
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| T |
34127042 |
gcgaaaaaatcaaacacttctatccagtttcttacattcttggtgtgctctttatcaaaataaccaattggtgtgatctcatctctggcaaccttcattt |
34127141 |
T |
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| Q |
525 |
tctcctccaaactctgagcaa |
545 |
Q |
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| T |
34127142 |
tctcctccaaactttgagcaa |
34127162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 330 - 491
Target Start/End: Original strand, 34143277 - 34143438
Alignment:
| Q |
330 |
tgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaag |
429 |
Q |
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|||| |||||||| |||||||| ||| |||||||||| | | | || |||||| |||||||||||| | ||||||| |||||||| || | ||| || |
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| T |
34143277 |
tgaagtgtggagggtattgaggggatggattagtccagtaagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
34143376 |
T |
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| Q |
430 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccag |
491 |
Q |
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| T |
34143377 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccag |
34143438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 12324008 - 12324064
Alignment:
| Q |
430 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
486 |
Q |
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||||||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |
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| T |
12324008 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12324064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 12375161 - 12375217
Alignment:
| Q |
430 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
486 |
Q |
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| T |
12375161 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12375217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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