View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19872_low_8 (Length: 436)

Name: NF19872_low_8
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19872_low_8
NF19872_low_8
[»] chr4 (11 HSPs)
chr4 (17-250)||(12707868-12708107)
chr4 (320-425)||(12708171-12708276)
chr4 (324-410)||(11596297-11596383)
chr4 (324-358)||(16303263-16303297)
chr4 (170-232)||(17274621-17274683)
chr4 (367-411)||(12895213-12895257)
chr4 (324-370)||(27706162-27706208)
chr4 (324-353)||(6485613-6485642)
chr4 (324-357)||(30298975-30299008)
chr4 (324-357)||(30327843-30327876)
chr4 (324-369)||(30838238-30838283)
[»] chr7 (10 HSPs)
chr7 (324-409)||(11272531-11272617)
chr7 (57-128)||(19272572-19272643)
chr7 (324-359)||(2334278-2334313)
chr7 (324-370)||(24339670-24339716)
chr7 (324-356)||(9408333-9408365)
chr7 (324-359)||(18039027-18039062)
chr7 (324-359)||(27945069-27945104)
chr7 (362-412)||(30813868-30813918)
chr7 (324-356)||(21560531-21560563)
chr7 (330-366)||(41414910-41414946)
[»] chr6 (9 HSPs)
chr6 (324-394)||(21395269-21395339)
chr6 (324-370)||(16766725-16766771)
chr6 (326-370)||(9107355-9107399)
chr6 (324-359)||(9911524-9911559)
chr6 (324-359)||(10770670-10770705)
chr6 (177-232)||(21513309-21513364)
chr6 (324-403)||(7930333-7930413)
chr6 (324-368)||(9522919-9522963)
chr6 (324-360)||(18252746-18252782)
[»] chr8 (8 HSPs)
chr8 (324-370)||(2572041-2572087)
chr8 (324-410)||(8343000-8343086)
chr8 (324-355)||(20873097-20873128)
chr8 (324-358)||(15816126-15816160)
chr8 (324-358)||(16867202-16867236)
chr8 (324-358)||(25566869-25566903)
chr8 (334-415)||(13436905-13436985)
chr8 (324-356)||(8343344-8343376)
[»] chr3 (10 HSPs)
chr3 (324-394)||(1509567-1509637)
chr3 (326-370)||(34185108-34185152)
chr3 (324-389)||(14747590-14747655)
chr3 (324-360)||(27505274-27505310)
chr3 (324-355)||(55401103-55401134)
chr3 (324-370)||(14209141-14209187)
chr3 (376-410)||(21478777-21478811)
chr3 (324-409)||(34910345-34910435)
chr3 (324-357)||(28918029-28918062)
chr3 (362-410)||(40052383-40052431)
[»] chr1 (22 HSPs)
chr1 (324-370)||(6612156-6612202)
chr1 (324-359)||(2218267-2218302)
chr1 (324-394)||(113327-113396)
chr1 (324-370)||(5376485-5376531)
chr1 (324-370)||(47989525-47989571)
chr1 (362-410)||(46940748-46940796)
chr1 (324-355)||(22515887-22515918)
chr1 (324-355)||(22881616-22881647)
chr1 (324-359)||(24577182-24577217)
chr1 (324-355)||(41877470-41877501)
chr1 (324-355)||(46348383-46348414)
chr1 (324-370)||(5944311-5944357)
chr1 (324-370)||(9629885-9629931)
chr1 (324-370)||(15449217-15449263)
chr1 (324-358)||(25272510-25272544)
chr1 (324-370)||(28273073-28273119)
chr1 (324-370)||(31694695-31694741)
chr1 (376-410)||(38078601-38078635)
chr1 (324-394)||(1704951-1705023)
chr1 (361-410)||(47989578-47989627)
chr1 (331-359)||(17778581-17778609)
chr1 (331-359)||(30173758-30173786)
[»] chr5 (9 HSPs)
chr5 (324-408)||(21351852-21351936)
chr5 (324-370)||(19579729-19579775)
chr5 (324-370)||(21542058-21542104)
chr5 (324-355)||(33178053-33178084)
chr5 (324-370)||(21522778-21522824)
chr5 (324-370)||(21533344-21533390)
chr5 (324-370)||(39698569-39698615)
chr5 (376-412)||(2436996-2437032)
chr5 (326-370)||(37328829-37328873)
[»] chr2 (7 HSPs)
chr2 (324-357)||(20539672-20539705)
chr2 (324-359)||(14996219-14996254)
chr2 (324-370)||(30717515-30717561)
chr2 (324-369)||(15657892-15657937)
chr2 (331-391)||(23058403-23058466)
chr2 (324-386)||(33153452-33153511)
chr2 (326-370)||(37419773-37419817)
[»] scaffold0126 (1 HSPs)
scaffold0126 (324-387)||(19172-19235)
[»] scaffold0236 (1 HSPs)
scaffold0236 (324-358)||(25765-25799)
[»] scaffold0025 (1 HSPs)
scaffold0025 (324-358)||(23798-23832)
[»] scaffold0011 (1 HSPs)
scaffold0011 (324-354)||(17750-17780)
[»] scaffold0053 (1 HSPs)
scaffold0053 (327-355)||(8829-8857)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 12707868 - 12708107
Alignment:
Q  17 agtttggccatcgaattgattcaatattcatctgaatcaattcaatcttcaaatgattcccagaacccattttagtctcttagtcgattcacactttctc 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12707868 agtttggtcatcgaattgattcaatattcatctgaatcaattcaatcttcaaatgattcccagaacccattatagtctcttagtcgattcacactttctc 12707967  T
Q  117 tgaatcgattcagattgtgtttttcactaaaaatcggctttc------tctgaaacccgccacctataaatataacttcccctcattgtacccatttatt 210  Q
    |||||||||||||||| |||||||||||||||||||||||||      |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12707968 tgaatcgattcagattttgtttttcactaaaaatcggctttctcttgttctgaaaccctccacctataaatataacttcccctcattgtacccatttatt 12708067  T
Q  211 gaattcatccattactattctcctatgaagcacgaatacg 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12708068 gaattcatccattactattctcctatgaagcacgaatacg 12708107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 320 - 425
Target Start/End: Original strand, 12708171 - 12708276
Alignment:
Q  320 tgaaataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatagcttttctct 419  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  12708171 tgaaataattcagtgtaattacaagtgtcgatgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcgtccgtgcttcatagcttttctct 12708270  T
Q  420 ctgctc 425  Q
    ||||||    
T  12708271 ctgctc 12708276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 11596383 - 11596297
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatag 410  Q
    |||||| ||||||||||||||||| |||||||||||  |||| |||||||| |||||||||||| ||||||  | ||||||||||||    
T  11596383 ataattcagtgtaattacaagtgtaggtgtcgtgtcattgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 16303297 - 16303263
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    |||||||||||||||||||||||||||||||||||    
T  16303297 ataatttagtgtaattacaagtgtcggtgtcgtgt 16303263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 17274621 - 17274683
Alignment:
Q  170 ccacctataaatataacttcccctcattgtacccatttattgaattcatccattactattctc 232  Q
    |||| ||||||||||||||||||||||| |  ||||||| ||||||||| ||||||| |||||    
T  17274621 ccacatataaatataacttcccctcattatttccatttactgaattcattcattacttttctc 17274683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 12895257 - 12895213
Alignment:
Q  367 gacatcggaacacgcctaatccgaggagcattcgtgcttcatagc 411  Q
    |||||||| |||||||||||||||||||  |||||||||||||||    
T  12895257 gacatcgggacacgcctaatccgaggagtgttcgtgcttcatagc 12895213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 27706208 - 27706162
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    ||||||||||||||||||||||||  |||||||||  ||||||||||    
T  27706208 ataatttagtgtaattacaagtgtgagtgtcgtgttaatgtcggaca 27706162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 6485642 - 6485613
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgt 353  Q
    ||||||||||||||||||||||||||||||    
T  6485642 ataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 30298975 - 30299008
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtg 357  Q
    |||||| |||||||||||||||||||||||||||    
T  30298975 ataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 30327843 - 30327876
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtg 357  Q
    |||||| |||||||||||||||||||||||||||    
T  30327843 ataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 30838238 - 30838283
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggac 369  Q
    ||||||||||||||||| |||| |||||||||||||  ||||||||    
T  30838238 ataatttagtgtaattataagtatcggtgtcgtgtcagtgtcggac 30838283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 11272617 - 11272531
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca-tcggaacacgcctaatccgaggagcattcgtgcttcata 409  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||  ||| ||||||||||||||||||| ||  ||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgcgggacacgcctaatccgaggagtatctgtgcttcata 11272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 19272643 - 19272572
Alignment:
Q  57 ttcaatcttcaaatgattcccagaacccattttagtctcttagtcgattcacactttctctgaatcgattca 128  Q
    ||||||||||||||||| |||| ||| |||||||||| |||| || ||||||||||||  ||||||||||||    
T  19272643 ttcaatcttcaaatgatgcccataacacattttagtcccttaatcaattcacactttcgttgaatcgattca 19272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 2334278 - 2334313
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    ||||||||||||||||||||||||||||||||||||    
T  2334278 ataatttagtgtaattacaagtgtcggtgtcgtgtc 2334313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 24339670 - 24339716
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||    
T  24339670 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 24339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 9408365 - 9408333
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgt 356  Q
    |||||||||||||||||||||||||||||||||    
T  9408365 ataatttagtgtaattacaagtgtcggtgtcgt 9408333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 18039027 - 18039062
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||| |||||||||||||||||||||||||||||    
T  18039027 ataattcagtgtaattacaagtgtcggtgtcgtgtc 18039062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 27945069 - 27945104
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||| |||||||||||||||||||||||||||||    
T  27945069 ataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 30813868 - 30813918
Alignment:
Q  362 tgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatagct 412  Q
    |||| |||||| |||||||||||||||||||||  | ||||||||||||||    
T  30813868 tgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatagct 30813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 21560531 - 21560563
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgt 356  Q
    |||||| ||||||||||||||||||||||||||    
T  21560531 ataattcagtgtaattacaagtgtcggtgtcgt 21560563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 41414910 - 41414946
Alignment:
Q  330 tagtgtaattacaagtgtcggtgtcgtgtctatgtcg 366  Q
    ||||||||||||||||||||||||||| || ||||||    
T  41414910 tagtgtaattacaagtgtcggtgtcgtatcgatgtcg 41414946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 21395339 - 21395269
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggag 394  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||    
T  21395339 ataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacaccaggacacgcctaatccaaggag 21395269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 16766725 - 16766771
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||    
T  16766725 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 16766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 9107399 - 9107355
Alignment:
Q  326 aatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||| |||||||||||||||||||||||||||||  |||||||||    
T  9107399 aattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 9107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 9911559 - 9911524
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||| |||||||||||||||||||||||||||||    
T  9911559 ataattcagtgtaattacaagtgtcggtgtcgtgtc 9911524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 10770705 - 10770670
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||| |||||||||||||||||||||||||||||    
T  10770705 ataattcagtgtaattacaagtgtcggtgtcgtgtc 10770670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 21513364 - 21513309
Alignment:
Q  177 taaatataacttcccctcattgtacccatttattgaattcatccattactattctc 232  Q
    |||||||||||||| ||||||||||||||| | ||| ||||| ||||||| |||||    
T  21513364 taaatataacttccactcattgtacccattaactgatttcattcattacttttctc 21513309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 7930333 - 7930413
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc-tatgtcggacatcggaacacgcctaatccgaggagcattcgtgc 403  Q
    ||||||||||| |||| |||||||||||||||||||   |||| |||| | | ||||||||||| |||||||  |||||||    
T  7930333 ataatttagtgaaatttcaagtgtcggtgtcgtgtcacgtgtccgacaccaggacacgcctaattcgaggagtgttcgtgc 7930413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 9522919 - 9522963
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcgga 368  Q
    |||||| ||||||||||||||||||||||| |||||  |||||||    
T  9522919 ataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcgga 9522963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 18252782 - 18252746
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtct 360  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  18252782 ataatttagtgtaattacaggtgtcggtatcgtgtct 18252746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 2572087 - 2572041
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2572087 ataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggaca 2572041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 410
Target Start/End: Original strand, 8343000 - 8343086
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatag 410  Q
    |||||||||||||||||||||||||||||||||   | |||| |||| ||| ||||||||||||||| |||  |  |||||||||||    
T  8343000 ataatttagtgtaattacaagtgtcggtgtcgtacatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Original strand, 20873097 - 20873128
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  20873097 ataatttagtgtaattacaagtgtcggtgtcg 20873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 15816160 - 15816126
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    ||||||||||||||||| |||||||||||||||||    
T  15816160 ataatttagtgtaattataagtgtcggtgtcgtgt 15816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 16867236 - 16867202
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    ||||||||||||||||| |||||||||||||||||    
T  16867236 ataatttagtgtaattataagtgtcggtgtcgtgt 16867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 25566869 - 25566903
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    |||||| ||||||||||||||||||||||||||||    
T  25566869 ataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 13436985 - 13436905
Alignment:
Q  334 gtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatagctttt 415  Q
    ||||| ||||||||||||||||||||  |||| |||| ||| ||||||||||||| |||||  |  ||||||||||| ||||    
T  13436985 gtaataacaagtgtcggtgtcgtgtcggtgtc-gacaccgggacacgcctaatccaaggagtgtctgtgcttcatagatttt 13436905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 8343344 - 8343376
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgt 356  Q
    ||||||||||||||||||||||||| |||||||    
T  8343344 ataatttagtgtaattacaagtgtcagtgtcgt 8343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 1509567 - 1509637
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggag 394  Q
    ||||||||||||||||||||||||||||||||| ||  |||| |||| ||| |||||||||||| ||||||    
T  1509567 ataatttagtgtaattacaagtgtcggtgtcgtttcggtgtccgacaccggtacacgcctaatcggaggag 1509637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 34185152 - 34185108
Alignment:
Q  326 aatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  34185152 aattcagtgtaattacaagtgtcggtgtcgtgtccatgtcggaca 34185108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 14747590 - 14747655
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccg 389  Q
    ||||||||||||||||||||| ||| ||||||||||| | || |||| ||  ||||||||||||||    
T  14747590 ataatttagtgtaattacaagggtccgtgtcgtgtctgtatccgacaccgagacacgcctaatccg 14747655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 27505274 - 27505310
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtct 360  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27505274 ataattaagtgtaattacaagtgtcggtgtcgtgtct 27505310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Original strand, 55401103 - 55401134
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  55401103 ataatttagtgtaattacaagtgtcggtgtcg 55401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 14209141 - 14209187
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||| ||||||||||  |||||||||    
T  14209141 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggaca 14209187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 410
Target Start/End: Original strand, 21478777 - 21478811
Alignment:
Q  376 acacgcctaatccgaggagcattcgtgcttcatag 410  Q
    ||||||||||||||||||||||| |||||||||||    
T  21478777 acacgcctaatccgaggagcatttgtgcttcatag 21478811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 409
Target Start/End: Original strand, 34910345 - 34910435
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacat-----cggaacacgcctaatccgaggagcattcgtgcttcata 409  Q
    |||||| |||||||||||||| ||||||||||| ||  ||||||||||     ||| ||||| |||||||||||||  | |||||||||||    
T  34910345 ataattcagtgtaattacaagagtcggtgtcgtatcggtgtcggacatgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 34910435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 28918029 - 28918062
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtg 357  Q
    |||||| |||||||||||||||||||||||||||    
T  28918029 ataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 40052383 - 40052431
Alignment:
Q  362 tgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatag 410  Q
    |||| |||| ||| |||||||||||||||||||  ||||||||||||||    
T  40052383 tgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 6612202 - 6612156
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  6612202 ataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggaca 6612156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 2218267 - 2218302
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218267 ataatttagtgtaattacaagtgtcggtgtcgtgtc 2218302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 113327 - 113396
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggag 394  Q
    |||||| ||||||||||||||||| |||||||||||  ||||  ||| ||| |||||||||||||||||||    
T  113327 ataattcagtgtaattacaagtgtaggtgtcgtgtc-gtgtccaacaccgggacacgcctaatccgaggag 113396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 5376531 - 5376485
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||    
T  5376531 ataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcggaca 5376485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 47989525 - 47989571
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||    
T  47989525 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 47989571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 46940796 - 46940748
Alignment:
Q  362 tgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatag 410  Q
    |||| |||| |||||||||||||||||||||||  ||||||||||||||    
T  46940796 tgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 22515918 - 22515887
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  22515918 ataatttagtgtaattacaagtgtcggtgtcg 22515887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 22881647 - 22881616
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  22881647 ataatttagtgtaattacaagtgtcggtgtcg 22881616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 24577217 - 24577182
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||| |||||||||||||||||||||||||||||    
T  24577217 ataattcagtgtaattacaagtgtcggtgtcgtgtc 24577182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 41877501 - 41877470
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  41877501 ataatttagtgtaattacaagtgtcggtgtcg 41877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 46348414 - 46348383
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 5944311 - 5944357
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||||    
T  5944311 ataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggaca 5944357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 9629931 - 9629885
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  9629931 ataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggaca 9629885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 15449263 - 15449217
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    ||||||||||||||||||||||||| ||||||| ||  |||||||||    
T  15449263 ataatttagtgtaattacaagtgtctgtgtcgtatcggtgtcggaca 15449217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 25272510 - 25272544
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    ||||||||||||||||| |||||||||||||||||    
T  25272510 ataatttagtgtaattataagtgtcggtgtcgtgt 25272544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 28273119 - 28273073
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||||||||| | || ||||||||||    
T  28273119 ataattcagtgtaattacaagtgtcggtgtcctatcgatgtcggaca 28273073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 31694741 - 31694695
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||| |||||||||||||||||||||||||  |||||||||    
T  31694741 ataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggaca 31694695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 410
Target Start/End: Complemental strand, 38078635 - 38078601
Alignment:
Q  376 acacgcctaatccgaggagcattcgtgcttcatag 410  Q
    ||||||||||||||||||| |||||||||||||||    
T  38078635 acacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 1705023 - 1704951
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtcta--tgtcggacatcggaacacgcctaatccgaggag 394  Q
    |||||| || |||||||||||||||||||||||||| |  |||| |||| ||  ||||||||||||| |||||    
T  1705023 ataattcagggtaattacaagtgtcggtgtcgtgtcaacgtgtccgacaccgagacacgcctaatccaaggag 1704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 47989578 - 47989627
Alignment:
Q  361 atgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcatag 410  Q
    ||||| |||||||| |||||||||||||||||||  | ||||||||||||    
T  47989578 atgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 17778581 - 17778609
Alignment:
Q  331 agtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||||||||||||||||||||||||||    
T  17778581 agtgtaattacaagtgtcggtgtcgtgtc 17778609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 30173786 - 30173758
Alignment:
Q  331 agtgtaattacaagtgtcggtgtcgtgtc 359  Q
    |||||||||||||||||||||||||||||    
T  30173786 agtgtaattacaagtgtcggtgtcgtgtc 30173758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 21351936 - 21351852
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatccgaggagcattcgtgcttcat 408  Q
    |||||| |||||||||||||||||||||||| ||||  |||| ||||  |||||||| ||||||||| |||  | ||||||||||    
T  21351936 ataattcagtgtaattacaagtgtcggtgtcatgtcggtgtccgacactggaacacgtctaatccgaagagtgtccgtgcttcat 21351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 19579729 - 19579775
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||    
T  19579729 ataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggaca 19579775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 21542058 - 21542104
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||    
T  21542058 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 21542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Original strand, 33178053 - 33178084
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcg 355  Q
    ||||||||||||||||||||||||||||||||    
T  33178053 ataatttagtgtaattacaagtgtcggtgtcg 33178084  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 21522778 - 21522824
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||||||||||||| |||||||||||||||  |||||||||    
T  21522778 ataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggaca 21522824  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 21533344 - 21533390
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||||||||||||| |||||||||||||||  |||||||||    
T  21533344 ataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggaca 21533390  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 39698569 - 39698615
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| |||||||||||||||||| ||||||||||  |||||||||    
T  39698569 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggaca 39698615  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 2436996 - 2437032
Alignment:
Q  376 acacgcctaatccgaggagcattcgtgcttcatagct 412  Q
    |||||||||||||||||||  ||||||||||||||||    
T  2436996 acacgcctaatccgaggagtgttcgtgcttcatagct 2437032  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 37328873 - 37328829
Alignment:
Q  326 aatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||| |||||||||||| ||||||||||||||||  |||||||||    
T  37328873 aattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggaca 37328829  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 20539705 - 20539672
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtg 357  Q
    ||||||||||||||||||||||||||||||||||    
T  20539705 ataatttagtgtaattacaagtgtcggtgtcgtg 20539672  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 14996254 - 14996219
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtc 359  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14996254 ataatttagtgtaattacaagtgtcggtgtcttgtc 14996219  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 30717561 - 30717515
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||||| ||||||||||||||||||| |||||||||  |||||||||    
T  30717561 ataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggaca 30717515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 15657892 - 15657937
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggac 369  Q
    |||||| ||||||||||||| ||||||||||||||  |||||||||    
T  15657892 ataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggac 15657937  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 23058466 - 23058403
Alignment:
Q  331 agtgtaattacaagtgtcggtgtcgtgtc---tatgtcggacatcggaacacgcctaatccgag 391  Q
    |||||||||||||||||||||||||||||     |||| |||| ||| ||||||||||||||||    
T  23058466 agtgtaattacaagtgtcggtgtcgtgtcggtgttgtccgacaccgggacacgcctaatccgag 23058403  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 33153452 - 33153511
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaat 386  Q
    |||||| |||||||||||||||||| ||||||||||   ||| |||||||| ||||| |||||    
T  33153452 ataattcagtgtaattacaagtgtccgtgtcgtgtc---gtctgacatcgggacacgtctaat 33153511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 37419773 - 37419817
Alignment:
Q  326 aatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggaca 370  Q
    |||| |||||||||||||||| ||||||||||||  |||||||||    
T  37419773 aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggaca 37419817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 19172 - 19235
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgtctatgtcggacatcggaacacgcctaatc 387  Q
    |||||| ||||| |||| || |||||||||||||||  | ||||||||||||||||| ||||||    
T  19172 ataattcagtgtgattaaaaatgtcggtgtcgtgtcagtatcggacatcggaacacgtctaatc 19235  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 25799 - 25765
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    ||||||||||||||||| |||||||||||||||||    
T  25799 ataatttagtgtaattataagtgtcggtgtcgtgt 25765  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 23798 - 23832
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtcgtgt 358  Q
    |||||| ||||||||||||||||||||||||||||    
T  23798 ataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 17780 - 17750
Alignment:
Q  324 ataatttagtgtaattacaagtgtcggtgtc 354  Q
    |||||||||||||||||||||||||||||||    
T  17780 ataatttagtgtaattacaagtgtcggtgtc 17750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 8829 - 8857
Alignment:
Q  327 atttagtgtaattacaagtgtcggtgtcg 355  Q
    |||||||||||||||||||||||||||||    
T  8829 atttagtgtaattacaagtgtcggtgtcg 8857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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