View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19872_low_9 (Length: 432)
Name: NF19872_low_9
Description: NF19872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19872_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 32 - 354
Target Start/End: Original strand, 43327009 - 43327337
Alignment:
| Q |
32 |
tttaattgttaaaaaagcaacaaacctgtatcagagatgagtccagtccgaagcatctgaggtatggatgcaatcaaaagatatgatgcaagcatggctg |
131 |
Q |
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| T |
43327009 |
tttaattgttaaaaaagcaacaaacctgtatcagagatgagtccagtccgaagcatctgaggtatggatgcaatcaaaagatatgatgcaagcatggctg |
43327108 |
T |
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| Q |
132 |
gccaaaacccagcagtagggataccaaacttgcttgccacttgtatggcccaagatgccaacaagtcaaccaccaccaaacatacatcatcaa------g |
225 |
Q |
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| T |
43327109 |
gccaaaacccagcagtagggataccaaacttgcttgccacttgtatggcccaagatgccaacaagtcaaccacaaccaaacatacatcatcaagattttg |
43327208 |
T |
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| Q |
226 |
attttgattttgaagaaactcttcaaaatggtttggcattatactctccatggatgattcaatggcaaagaaatctggtgttgtactgtcctcttccatc |
325 |
Q |
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| T |
43327209 |
attttgattttgaagaaactcttcaaaatggtttggcattatactctccatggatgattcaatggcaaagaaatctggtgttgtactgtcctcttccatc |
43327308 |
T |
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| Q |
326 |
ccatctgccaaagcaacccacttgatgat |
354 |
Q |
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| T |
43327309 |
ccatctgccaaagcaacccacttgatgat |
43327337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 43327361 - 43327394
Alignment:
| Q |
381 |
tattattaatcttcttatgaacatgttgagggag |
414 |
Q |
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| T |
43327361 |
tattattaatcttcttatgaacatgttgagggag |
43327394 |
T |
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