View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19873_high_1 (Length: 542)

Name: NF19873_high_1
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19873_high_1
NF19873_high_1
[»] chr2 (11 HSPs)
chr2 (338-523)||(15773466-15773653)
chr2 (433-523)||(15794412-15794502)
chr2 (59-157)||(31559351-31559449)
chr2 (64-111)||(28167154-28167201)
chr2 (230-267)||(44904601-44904638)
chr2 (230-266)||(16288923-16288959)
chr2 (79-150)||(9262707-9262778)
chr2 (216-267)||(28167269-28167319)
chr2 (290-328)||(28165666-28165704)
chr2 (230-264)||(28165732-28165766)
chr2 (75-115)||(5694804-5694844)
[»] chr3 (17 HSPs)
chr3 (64-161)||(27661261-27661358)
chr3 (79-157)||(34595590-34595668)
chr3 (59-136)||(34594418-34594495)
chr3 (64-103)||(13645043-13645082)
chr3 (64-115)||(20340168-20340219)
chr3 (69-119)||(26537590-26537640)
chr3 (64-109)||(3149448-3149493)
chr3 (59-124)||(27329024-27329089)
chr3 (67-108)||(27662441-27662482)
chr3 (64-104)||(1677172-1677212)
chr3 (64-104)||(13645309-13645349)
chr3 (216-267)||(3149332-3149382)
chr3 (110-157)||(33551751-33551798)
chr3 (59-124)||(27320489-27320554)
chr3 (214-267)||(27661165-27661217)
chr3 (230-267)||(33551653-33551690)
chr3 (230-258)||(3149972-3150000)
[»] chr8 (6 HSPs)
chr8 (64-157)||(44690187-44690280)
chr8 (59-124)||(37964441-37964506)
chr8 (230-267)||(45447076-45447113)
chr8 (228-267)||(25562735-25562774)
chr8 (59-124)||(27409964-27410029)
chr8 (59-124)||(27411033-27411098)
[»] chr1 (11 HSPs)
chr1 (59-150)||(9419614-9419705)
chr1 (59-124)||(27524469-27524534)
chr1 (59-124)||(28253428-28253493)
chr1 (64-111)||(13223101-13223148)
chr1 (69-111)||(12097763-12097805)
chr1 (230-267)||(46605874-46605911)
chr1 (64-119)||(13229098-13229153)
chr1 (61-104)||(43882243-43882286)
chr1 (65-103)||(40767817-40767855)
chr1 (67-103)||(12096070-12096106)
chr1 (64-96)||(33753843-33753875)
[»] chr7 (8 HSPs)
chr7 (82-157)||(20207845-20207920)
chr7 (64-111)||(38758145-38758192)
chr7 (59-124)||(19639792-19639857)
chr7 (64-103)||(30045978-30046017)
chr7 (65-104)||(44815925-44815964)
chr7 (64-104)||(5975484-5975524)
chr7 (78-118)||(19638715-19638755)
chr7 (64-104)||(27160505-27160545)
[»] chr5 (3 HSPs)
chr5 (64-111)||(33489727-33489774)
chr5 (61-103)||(35929726-35929768)
chr5 (64-104)||(35931166-35931206)
[»] chr6 (2 HSPs)
chr6 (59-127)||(28050154-28050222)
chr6 (64-119)||(1134324-1134378)
[»] chr4 (5 HSPs)
chr4 (64-99)||(2671736-2671771)
chr4 (64-103)||(11148542-11148581)
chr4 (232-267)||(34538196-34538231)
chr4 (64-103)||(34538322-34538361)
chr4 (60-104)||(2672778-2672822)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 338 - 523
Target Start/End: Complemental strand, 15773653 - 15773466
Alignment:
Q  338 ccaaagcaaaatagattctattgatcaaactagtagaaagg--aaaatttacaacttaattacaacatggaatccttctcatgatgtagcatatgcattc 435  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  15773653 ccaaagcaaaatagattctattgatcaaactagtagaaaggtaaaaatttacaacttcattacaacatgcaatccttctcatgatgtagcatatgctttc 15773554  T
Q  436 catcaggctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgctggaatcacttaccataacag 523  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15773553 catcaagctgtgctagatgccaattcaatctcatatttcctcataataggagtagcacatacaatgctggaatcacttaccataacag 15773466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 433 - 523
Target Start/End: Original strand, 15794412 - 15794502
Alignment:
Q  433 ttccatcaggctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgctggaatcacttaccataacag 523  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15794412 ttccatcactctgtgctagatgccaattcaatctcatacttcctcataataggagtagcacatacaatgttggaatcacttaccataacag 15794502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 31559351 - 31559449
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtg 157  Q
    |||| |||||||||||| |||||||||||||||||| | || | ||| || ||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  31559351 catccctatgtaaatattcgtttttggttttagtccttgtaatcacaacacttatcatctctcatgccacataaacgtgttttgccaactcatcaagtg 31559449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 28167154 - 28167201
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagtt 111  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  28167154 ctatgtaaaaatgcgtttttgattttagtccctctactaagaccagtt 28167201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 44904638 - 44904601
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  44904638 aatttcaaaaagttaagaaaatacaagggttgtttcgc 44904601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 16288923 - 16288959
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgtttcg 266  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16288923 aatttcaaaaagttaagaaaatacaagggttgtttcg 16288959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 9262707 - 9262778
Alignment:
Q  79 tttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctca 150  Q
    ||||||||||||||||||||| | | | || ||||||||||||| | |||||||  ||||||||||| ||||    
T  9262707 tttttggttttagtccctctaatcataacacttatcatctctcacgccacataactgtgttttgccaactca 9262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 28167269 - 28167319
Alignment:
Q  216 gacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||| |||||||| |||||| ||||||||||| ||||||||    
T  28167269 gacggcagagaccaa-tttcaaaaggttaagtaaatacaagggttgtttcgc 28167319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 28165704 - 28165666
Alignment:
Q  290 aaaccaaaaacccgctaacttacatagaccttttacata 328  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  28165704 aaaccaaaaacgcgctaacttacatggaccttttacata 28165666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 28165766 - 28165732
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgttt 264  Q
    ||||||||||||||||||||||||||||| |||||    
T  28165766 aatttcaaaaagttaagaaaatacaagggttgttt 28165732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 5694844 - 5694804
Alignment:
Q  75 tgcgtttttggttttagtccctctactaacaccagttatca 115  Q
    |||||||||||||||||||||| ||||||| ||||| ||||    
T  5694844 tgcgtttttggttttagtccctatactaaccccagtcatca 5694804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 27661358 - 27661261
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtgtcac 161  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  27661358 ctatgtaaatatgtgttatttgttttagtccctctactaacaccagttgtcatctctcatgccacataagcgtgtttttccatctcatcaattgtcac 27661261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 34595590 - 34595668
Alignment:
Q  79 tttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtg 157  Q
    ||||||||||||||||||||| | ||| || ||| ||||| ||||| |||||||||||||||||||| |||| ||||||    
T  34595590 tttttggttttagtccctctaatcacaacacttaccatctttcatgccacataagcgtgttttgccaactcagcaagtg 34595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 34594495 - 34594418
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgt 136  Q
    |||| |||||||||| | ||||||||||||||||||||||| | ||| || ||||| ||||||||||||| |||||||    
T  34594495 catccctatgtaaatttccgtttttggttttagtccctctaatcacaacaattatcgtctctcatgtcacgtaagcgt 34594418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 13645082 - 13645043
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  13645082 ctatgtaaatttgcgtttttggttttagtccctctactaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 20340168 - 20340219
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatca 115  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||| ||||    
T  20340168 ctatgtaaaaatgcgtttttggttttggtccctatactaacaccagtcatca 20340219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 26537640 - 26537590
Alignment:
Q  69 taaatatgcgtttttggttttagtccctctactaacaccagttatcatctc 119  Q
    |||||||| ||||||| ||||||||||||||||||||||| || |||||||    
T  26537640 taaatatgtgtttttgattttagtccctctactaacaccaattgtcatctc 26537590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 3149493 - 3149448
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccag 109  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||    
T  3149493 ctatgtaaaaatgcgtctttggttttagtccctctactaagaccag 3149448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 27329089 - 27329024
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| || ||||||||||||||||| | || |||||| | |||||||||||||||    
T  27329089 catccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctctcatg 27329024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 27662441 - 27662482
Alignment:
Q  67 tgtaaatatgcgtttttggttttagtccctctactaacacca 108  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  27662441 tgtaaatatgcgtttttagttttagtccctctactaagacca 27662482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 1677212 - 1677172
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  1677212 ctatgtaaatttgcgtttttggttttagtccctctaataac 1677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 13645309 - 13645349
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  13645309 ctatgtaaatttgcgttttaggttttagtccctctactaac 13645349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 3149382 - 3149332
Alignment:
Q  216 gacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||| |||||||| |||||| ||||||||||| ||||||||    
T  3149382 gacggcagagaccaa-tttcaaaaggttaagtaaatacaagggttgtttcgc 3149332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 33551798 - 33551751
Alignment:
Q  110 ttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtg 157  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  33551798 ttatcatctctcatgccacataagcgtgttttgccgactcagcaagtg 33551751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 27320489 - 27320554
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| | |||||||| ||||||||||| || |||||| | |||| ||||||||||    
T  27320489 catccctatgtaaattttcgtttttgattttagtccctgtattaacactacttatgatctctcatg 27320554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 27661217 - 27661165
Alignment:
Q  214 ctgacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||    
T  27661217 ctgacggcagagaccaa-tttcaaaaaattaagtaaatacaaaggttgtttcgc 27661165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 33551690 - 33551653
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  33551690 aattccaaaaagttaagaagatacaagggctgtttcgc 33551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 3149972 - 3150000
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaaggg 258  Q
    |||||||||||||||||||||||||||||    
T  3149972 aatttcaaaaagttaagaaaatacaaggg 3150000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 44690280 - 44690187
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtg 157  Q
    ||||||||||||  |||||||||||||||||||| | ||||| || ||||||||||||||| ||||||||| |||||||||| |||| ||||||    
T  44690280 ctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtg 44690187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 37964441 - 37964506
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| | |||||||||||||||||||| || |||||| | |||| ||||||||||    
T  37964441 catccctatgtaaattttcgtttttggttttagtccctgtattaacactacttatgatctctcatg 37964506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 45447113 - 45447076
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  45447113 aatttcaaaaagttaagaaaatacaagggttgtttcgc 45447076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 25562735 - 25562774
Alignment:
Q  228 caaatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  25562735 caaatttaaaaaagttaagaaaatacaagggttgtttcgc 25562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 27410029 - 27409964
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| | |||||||||||| ||||||| || |||||| | |||| ||||||||||    
T  27410029 catccctatgtaaattttcgtttttggtttaagtccctgtattaacactacttatgatctctcatg 27409964  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 27411033 - 27411098
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| || |||||| |||||||||| | || |||||| | |||||||||||||||    
T  27411033 catccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctctcatg 27411098  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 9419614 - 9419705
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctca 150  Q
    |||| |||||||||||| |||||||||||||| |||||||| | ||| || ||||||| | ||||| |||||||||||||||||||| ||||    
T  9419614 catccctatgtaaatattcgtttttggttttattccctctaatcacaacacttatcatatttcatgccacataagcgtgttttgccaactca 9419705  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 27524534 - 27524469
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| || ||||||||||||||||||| ||||||||| | |||||||||||||||    
T  27524534 catccctatgtaaatttgtgtttttggttttagtccctgtactaacactacttatcatctctcatg 27524469  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 28253428 - 28253493
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||| | |||||||||||||||    
T  28253428 catccctatgtaaatttacgtttttgattttagtccctctactaacactacttatcatctctcatg 28253493  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 13223148 - 13223101
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagtt 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  13223148 ctatgtaaaaatgcgtttttggttttagtccctctactaacactagtt 13223101  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 12097763 - 12097805
Alignment:
Q  69 taaatatgcgtttttggttttagtccctctactaacaccagtt 111  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  12097763 taaaaatgcgtttttggttttagtccctctactaagaccagtt 12097805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 46605874 - 46605911
Alignment:
Q  230 aatttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  46605874 aatttcaaaaagttaagaaaatacaagggttgtttcgc 46605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 13229098 - 13229153
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctc 119  Q
    ||||||||| ||| |||||| ||||||||||||||||||| | ||||| |||||||    
T  13229098 ctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgtcatctc 13229153  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 43882286 - 43882243
Alignment:
Q  61 tctctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||    
T  43882286 tctctatgtaaattttcgtttttggttttagtccctctaataac 43882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 40767855 - 40767817
Alignment:
Q  65 tatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  40767855 tatgtaaaaatgcgtttttcgttttagtccctctactaa 40767817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 12096106 - 12096070
Alignment:
Q  67 tgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    |||||| |||||||||||||||||||| |||||||||    
T  12096106 tgtaaaaatgcgtttttggttttagtcactctactaa 12096070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 33753875 - 33753843
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccct 96  Q
    ||||||||| |||||||||||||||||||||||    
T  33753875 ctatgtaaaaatgcgtttttggttttagtccct 33753843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 20207920 - 20207845
Alignment:
Q  82 ttggttttagtccctctactaacaccagttatcatctctcatgtcacataagcgtgttttgccatctcatcaagtg 157  Q
    |||||||||||||||||| | |||  | |||||||| ||||||  ||||||||||||||||||| |||| ||||||    
T  20207920 ttggttttagtccctctaatcacaatacttatcatcgctcatgcgacataagcgtgttttgccaactcagcaagtg 20207845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 38758145 - 38758192
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagtt 111  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  38758145 ctatgtaaaaatgtgtttttggttttagtccctctactaagaccagtt 38758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 19639792 - 19639857
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatg 124  Q
    |||| ||||||||| |||||||||| |||||| |||||||||||||| | ||| ||| ||||||||    
T  19639792 catccctatgtaaacatgcgttttttgttttaatccctctactaacaacggttgtcaactctcatg 19639857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 30046017 - 30045978
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  30046017 ctatgtaaaaatacgtttttggttttagtccctctactaa 30045978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 44815925 - 44815964
Alignment:
Q  65 tatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  44815925 tatgtaaaaatgcgtttttggttttagcccctctactaac 44815964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 5975484 - 5975524
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  5975484 ctatgtaaatttgcattttttgttttagtccctctactaac 5975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 19638755 - 19638715
Alignment:
Q  78 gtttttggttttagtccctctactaacaccagttatcatct 118  Q
    |||||| ||||||||||||||||||| |||||||| |||||    
T  19638755 gttttttgttttagtccctctactaagaccagttaccatct 19638715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 27160545 - 27160505
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    ||||||||| ||||||||||| ||||||||||| |||||||    
T  27160545 ctatgtaaaaatgcgtttttgattttagtccctatactaac 27160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 33489727 - 33489774
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagtt 111  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  33489727 ctatgtaaaaatgcgtttttggtattagtccctctactaagaccagtt 33489774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 35929768 - 35929726
Alignment:
Q  61 tctctatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  35929768 tctctatgtaaaaatgcgtttttgattttagtccctatactaa 35929726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 35931166 - 35931206
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  35931166 ctatgtaaaaatgcgtttttggttttagttcctatactaac 35931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 28050154 - 28050222
Alignment:
Q  59 catctctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctctcatgtca 127  Q
    |||| ||| ||||||||||||||||  ||||||||||||| | ||||  | ||||||||||||||||||    
T  28050154 catccctacgtaaatatgcgttttttattttagtccctctgccaacaatacttatcatctctcatgtca 28050222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 1134378 - 1134324
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaacaccagttatcatctc 119  Q
    ||||||||||||||||||||| ||| ||||||||||||||  |||||| |||||||    
T  1134378 ctatgtaaatatgcgtttttgattt-agtccctctactaagtccagttgtcatctc 1134324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 2671771 - 2671736
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctcta 99  Q
    |||||||||| |||||||||||||||||||||||||    
T  2671771 ctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 11148581 - 11148542
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  11148581 ctatgtaaaaatgtgtttttggttttagtccctctactaa 11148542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 34538231 - 34538196
Alignment:
Q  232 tttcaaaaagttaagaaaatacaagggctgtttcgc 267  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34538231 tttcaaaaagttaagaaaatacaagggttgtttcgc 34538196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 34538361 - 34538322
Alignment:
Q  64 ctatgtaaatatgcgtttttggttttagtccctctactaa 103  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  34538361 ctatgtaaaaatgcgtttttcgttttagtccctctactaa 34538322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 2672778 - 2672822
Alignment:
Q  60 atctctatgtaaatatgcgtttttggttttagtccctctactaac 104  Q
    |||||||||| ||  |||||||||||||||||||||| |||||||    
T  2672778 atctctatgttaaattgcgtttttggttttagtccctatactaac 2672822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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