View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_high_11 (Length: 273)
Name: NF19873_high_11
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34866568 - 34866830
Alignment:
| Q |
1 |
cttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttg |
100 |
Q |
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| T |
34866568 |
cttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttg |
34866667 |
T |
|
| Q |
101 |
tcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866668 |
tcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaat |
34866767 |
T |
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| Q |
201 |
cagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
263 |
Q |
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| T |
34866768 |
cagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
34866830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 51857487 - 51857227
Alignment:
| Q |
1 |
cttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttg |
100 |
Q |
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|||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||| | |||| || |
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| T |
51857487 |
cttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatcttactaacaacttttttgaatttacctgatgacacatgcccctg |
51857388 |
T |
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| Q |
101 |
tcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857387 |
tcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaat |
51857288 |
T |
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| Q |
201 |
cagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatat |
262 |
Q |
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|| || |||| |||||||||||| ||| |||| ||||| ||||| || |||||||| ||||| |
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| T |
51857287 |
caatttgtaaagtgaaggatatcgaccaccttctaagc-ctactttggccatattactatat |
51857227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
43 |
gtgtttggaagagcttatttacaacttatttgaattta |
80 |
Q |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 37579900 - 37579956
Alignment:
| Q |
167 |
aatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatc |
223 |
Q |
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||||| |||| | |||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
37579900 |
aatttagatttggtctaactcaaccctacaaaatcagcttgtaaggtgaaagatatc |
37579956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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