View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_high_12 (Length: 269)
Name: NF19873_high_12
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 29243611 - 29243850
Alignment:
| Q |
14 |
tactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgcttttggtattatcttttgatgacagtt |
113 |
Q |
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| T |
29243611 |
tactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgcttttggtattatcttttgataacagtt |
29243710 |
T |
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| Q |
114 |
gcgaagtttggtgtgatatgatcaatcagttctatgatcattgtcttctgatagtagggttctcaatatgcttctactttacgcctggaaagttgaatga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29243711 |
gcgaagtttggtgtgatatgatcaatcagttctatgatcattgtcttctgatagtagggttctcaatatgcttctactttacgcctggaaagttgaatga |
29243810 |
T |
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| Q |
214 |
tgaaggtgtagtttagaaaa-ggggttggctcatagtaat |
252 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
29243811 |
tgaaggtgtagtttagaaaagggggttggctcatagtaat |
29243850 |
T |
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