View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_high_5 (Length: 341)
Name: NF19873_high_5
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 35940096 - 35940421
Alignment:
| Q |
1 |
cccgacaaagattaccaacattggaggtggcaaccacacggttgcgatcttcctaagtaagtgtttatttattttgtttgcttcttattcaagtttgtag |
100 |
Q |
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| T |
35940096 |
cccgacaaagattaccaacattggaggtggcaaccacacggttgcgatcttcctaagtaagtgtttatttattttgtttacttcttattcaagtttgtag |
35940195 |
T |
|
| Q |
101 |
ctataaaagatgatttttgtgtgacaaaaatgcagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttggagactctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940196 |
ctataaaagatgatttttgtgtgacaaaaatgcagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttggagactctc |
35940295 |
T |
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| Q |
201 |
tcaatcgtggtcaatatgtttcttttgtgtgccttctccatcaactcattcctgaggatgctaaatccatggaaacctttgattcactcactgttttcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940296 |
tcaatcgtggtcaatatgtttcttttgtgtgccttctccatcaactcattcccgaggatgctaaatccatggaaacctttgattcactcactgttttcac |
35940395 |
T |
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| Q |
301 |
agcaaaggtaaatcacatgttatctc |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35940396 |
agcaaaggtaaatcacatgttatctc |
35940421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 32181483 - 32181660
Alignment:
| Q |
133 |
cagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttggagactctctcaatcgtggtcaatatgtttcttttgtgtgc |
232 |
Q |
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|||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| | || |
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| T |
32181483 |
cagattcaatgccagcttaatgctagaaacacttcgtgggaagaggatgatgtttgtcggggactctctcaatcggggtcagtatgtctctttgatatgt |
32181582 |
T |
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| Q |
233 |
cttctccatcaactcattcctgaggatgctaaatccatggaaacctttgattcactcactgttttcacagcaaaggta |
310 |
Q |
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||||||||||| |||||||| | |||| ||||| ||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
32181583 |
cttctccatcatctcattccccaacatgccaaatcgatggaaacctttgattctctcactgtcttcacagccaaggta |
32181660 |
T |
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