View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19873_high_8 (Length: 316)
Name: NF19873_high_8
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 8006909 - 8007063
Alignment:
| Q |
11 |
cacagaacttgtaatgcagaaaagttagctcattgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8006909 |
cacagaacttgtaatgcagaaaagttagctcattgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattc |
8007008 |
T |
|
| Q |
111 |
aaagataagaataactaccatcacgtgtaacacgataatacaggttaatgaatga |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8007009 |
aaagacaagaataactaccatcacgtgtaacacgataatacaggttaatgaatga |
8007063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 8007313 - 8007444
Alignment:
| Q |
167 |
aaaaataaataaacttagaaaagccatatccttttagagttcttacaagaaacttcttggtctgtaatatctgccattttacatgaatgtgacataactt |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8007313 |
aaaaataaataaacttagaaaagtcatatccttttagagttcttacaagaaacttcttggtctgtaatatctgccattttacatgaatgtgacataactt |
8007412 |
T |
|
| Q |
267 |
tcaccgtaactttgtccattatgagcacctac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8007413 |
tcaccgtaactttgtccattatgagcacctac |
8007444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University