View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_12 (Length: 277)
Name: NF19873_low_12
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_12 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 28801040 - 28800888
Alignment:
| Q |
71 |
ttccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatctacct |
170 |
Q |
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| T |
28801040 |
ttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacct |
28800941 |
T |
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| Q |
171 |
cggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaa |
223 |
Q |
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| T |
28800940 |
caaccacaccattataaaagataacctcattccgtctcttccaaataacccaa |
28800888 |
T |
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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 21019166 - 21019035
Alignment:
| Q |
115 |
actcatactccaataccacgaaagaactttaatattctccaccaaatcatctacctcggccacaccattattaaatacaatgtcattccttcgcttcc-a |
213 |
Q |
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| T |
21019166 |
actcaaactccaataccatgatagaactttaatattttccaccaaatcatctaagtcgacaacacca-tattgaacacaatatcattccttctcttccaa |
21019068 |
T |
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| Q |
214 |
tatagcccaagttgaagcattccaaatcaaccg |
246 |
Q |
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| T |
21019067 |
aatagcccaaaccgtcgcattccaaatcaaccg |
21019035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 2516808 - 2516850
Alignment:
| Q |
225 |
ttgaagcattccaaatcaaccgaaaaccattcttagtcttctt |
267 |
Q |
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| T |
2516808 |
ttgaagcattccaaatcaaccgaaaaccatttttagtcttctt |
2516850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 13854474 - 13854432
Alignment:
| Q |
130 |
ccacgaaagaactttaatattctccaccaaatcatctacctcg |
172 |
Q |
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| T |
13854474 |
ccacgacaaaactttaatcttctccaccaaatcatctacctcg |
13854432 |
T |
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Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 2926 - 2999
Alignment:
| Q |
59 |
cattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaatacca |
132 |
Q |
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| T |
2926 |
cattcctgtgggttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaacca |
2999 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 7859420 - 7859323
Alignment:
| Q |
70 |
attccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatcta |
167 |
Q |
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| T |
7859420 |
attcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctcta |
7859323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 4282363 - 4282174
Alignment:
| Q |
55 |
taaacattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatca-actcatactccaataccacgaaagaactttaatattctc |
153 |
Q |
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| T |
4282363 |
taaacaatcccgagggttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctttatattctc |
4282264 |
T |
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| Q |
154 |
caccaaatcatctacctcggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaagttgaagcattccaaatcaa |
243 |
Q |
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| T |
4282263 |
gaccacatcctccatctctacaacaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaa |
4282174 |
T |
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