View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_2 (Length: 527)
Name: NF19873_low_2
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 4632159 - 4631661
Alignment:
| Q |
19 |
attccactcataccaaattatttaggtaaacaccatatgattgtcattttgatgttgaaagttcaaacattattttctcatccaatatacacgtt-cccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
4632159 |
attccactcataccaaattatttaggtaaacaccatttgattgtcattttgatgttgaaagttcaaacattattttcccatccaatatacacgtttcccc |
4632060 |
T |
|
| Q |
118 |
ctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcaccctactg |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632059 |
ctcaataaatgcaacttcttgcatggcaaacttcaacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcaccctactg |
4631960 |
T |
|
| Q |
218 |
tctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatacta |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631959 |
tctagtaatttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatacta |
4631860 |
T |
|
| Q |
318 |
tctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631859 |
tctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaa |
4631760 |
T |
|
| Q |
418 |
tcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
516 |
Q |
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| T |
4631759 |
tcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
4631661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 56 - 496
Target Start/End: Complemental strand, 4668115 - 4667683
Alignment:
| Q |
56 |
tgattgtcattttgatgttgaaagttcaaacattattttctcatccaatatacacgttccccctcaataaatgcaacttcttgcatgacaaacttcaaca |
155 |
Q |
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||||||| |||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| |
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| T |
4668115 |
tgattgtaattttgatgttgaaagttggaacattattttcccgtccaata--cacgttccacctcaataaatgcaacttcttgcatggcatacttcgaca |
4668018 |
T |
|
| Q |
156 |
aaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccc |
255 |
Q |
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| T |
4668017 |
aaaattctctagttatggccaactccctaaagaacatagttcctagtgaaataaccttactgtctattactttgtttctccttcatctatcgttgtttcc |
4667918 |
T |
|
| Q |
256 |
tctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataac |
355 |
Q |
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||| | ||||||||||| |||||| ||||||| || |||||||| || | || ||||||||||||||||||||||| ||||||||||||| ||| | |
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| T |
4667917 |
tctcgcggttaacagctcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgat |
4667818 |
T |
|
| Q |
356 |
accaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcct |
455 |
Q |
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| T |
4667817 |
accaaactcttctctgtcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgattctgttaatcatattccattttcct |
4667724 |
T |
|
| Q |
456 |
ctgcacgtatttctttttcgaatttcacattctccttttct |
496 |
Q |
| |
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|||||||||| || ||||| ||||||||||||| |||||| |
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| T |
4667723 |
ctgcacgtatatcattttccgatttcacattctcattttct |
4667683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 248 - 516
Target Start/End: Original strand, 18924850 - 18925115
Alignment:
| Q |
248 |
ttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggaca |
347 |
Q |
| |
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||||||||||||| ||||||| | ||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||| |||||||| |||| |
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| T |
18924850 |
ttgttccctctagtggttaac---tcttatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgaca |
18924946 |
T |
|
| Q |
348 |
gggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcc |
447 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| |
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| T |
18924947 |
tggatgacaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattcc |
18925046 |
T |
|
| Q |
448 |
cttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
516 |
Q |
| |
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|| ||||| ||||||||||| ||||| || ||||||||||| ||| ||||| || | ||| ||||||| |
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| T |
18925047 |
gtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatagccctat |
18925115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 18924760 - 18924819
Alignment:
| Q |
151 |
caacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcacc |
211 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |
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| T |
18924760 |
caacaaaaattctttaga-atggccaactacctaaagaacatagttcttactaaaatcacc |
18924819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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