View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_5 (Length: 465)
Name: NF19873_low_5
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 54 - 449
Target Start/End: Complemental strand, 4313660 - 4313260
Alignment:
| Q |
54 |
ccaactcccaacaaaaatgagattacaaaaaatttgtggtacttttgttgaggtcatttttacagtagtaatcccaaaggaacaaaaatagtttatttcc |
153 |
Q |
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| T |
4313660 |
ccaactcccaacaaaaatgagattacaaaaaattggtggtacttttgttgaggtcatttgtacagtagtaatcccaaaggaacaaaaatagtttatttcc |
4313561 |
T |
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| Q |
154 |
atatt-gctttctcggtacaaaatgtcataattattagaacaacaaaccggacactaaagaaatctggtaaataaacgtacacaagaacacaacgattga |
252 |
Q |
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| T |
4313560 |
atatttgctgtctcggtacaaaatgtcataattattagaacaacaaaccggacactaaagaaatctggtaaataa-cgtacacaagaacacaacgattga |
4313462 |
T |
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| Q |
253 |
tcacgtgcttgttgcactttcagctccactctctacgctacactgaagactcttccggttttcccacttaacaaggaatatgagccatagtgaacaataa |
352 |
Q |
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| T |
4313461 |
tcacatgcttgttgcactttcagctccactctctacgctacactgaagactcttccggtcttcccacttaacagggaatatgagccatagtgaacaataa |
4313362 |
T |
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| Q |
353 |
tg--nnnnnnnnaaagaatagtgaacaataatgtttgtatagtagtactct---gtagtggttgatgatggtaaacgagttcttattttgcaggctggtt |
447 |
Q |
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| T |
4313361 |
tgttttttttttaaagaatagtgaacaataatgtttgtatagtagtactctgtagtagtggttgatgatggtaaacgagttcttattttgcaggctggtt |
4313262 |
T |
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| Q |
448 |
tt |
449 |
Q |
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|| |
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| T |
4313261 |
tt |
4313260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4313839 - 4313803
Alignment:
| Q |
1 |
tttccaagcttaaatggatttcaatgtcccttttagg |
37 |
Q |
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| T |
4313839 |
tttccaagcttaaatggatttcaatgtcccttttagg |
4313803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 12666558 - 12666592
Alignment:
| Q |
221 |
taaataaacgtacacaagaacacaacgattgatca |
255 |
Q |
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| T |
12666558 |
taaataaacgcacacaagaacacaacgattgatca |
12666592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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