View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_6 (Length: 447)
Name: NF19873_low_6
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 43230507 - 43230923
Alignment:
| Q |
20 |
cagcctctaccttttcattattcaacatcatttcaataaataccttttgaacagcaatattattattcatgatggaaaaatcgttgtgtcgttggcgccg |
119 |
Q |
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| T |
43230507 |
cagcctctaccttttcattattcaacatcatttcaataaataccttttgaacagcaatattattattcatgatggaaaaatcgttgtgtcgttggcgccg |
43230606 |
T |
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| Q |
120 |
tgacttggagaagcggcggctagagtggcggagagggttggcaggagtgtttctgcagctgaattcgtattcgcatggagagatgaatgagttgttgtca |
219 |
Q |
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| T |
43230607 |
tgacttggagaagcggcggctagagtggcggagagggttggcaggagtgtttctgcagctgaattcgtattcgcatggagagatgaatgagttgttgtcg |
43230706 |
T |
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| Q |
220 |
gagcgacatgtgaaggaagaatgataaaattgatggttgagcatgagagtattgattaatgcttttccagcaagtttcccacgtttgagaattaaattga |
319 |
Q |
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| T |
43230707 |
gagcgacatgtgaaggaagaatgataaagttgatggttgagcatgagagtattgattaatgcttttccagcaagtttcccacgtttgagaatcaaattga |
43230806 |
T |
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| Q |
320 |
ggtctaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctttgccaccacgccttgccttgc |
419 |
Q |
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| T |
43230807 |
ggtgtaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctttgccaccacgccttgccttgc |
43230906 |
T |
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| Q |
420 |
ttcaatttccatattct |
436 |
Q |
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| T |
43230907 |
ttcaatttccattttct |
43230923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 43235173 - 43235233
Alignment:
| Q |
367 |
aataatacacgtaccatgttccatagcttctttgccaccacgccttgccttgcttcaattt |
427 |
Q |
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| T |
43235173 |
aataatacacttaccatgttccatagcttctttgctacgatgtcttgccttgctccaattt |
43235233 |
T |
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