View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_8 (Length: 330)
Name: NF19873_low_8
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 50192641 - 50192934
Alignment:
| Q |
16 |
attataaacaacaacattaacaatcacaggttaaataaaaccattctacaagcaattaattaagacaaaaataacaaatagaaacgaatgattcacaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50192641 |
attataaacaacaacattaacaatcacaggttaaataacaccattctacaagcaattaattaagacaaaaataacaaatagaaacgaatgattcacaatt |
50192740 |
T |
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| Q |
116 |
accaactgaaagcagtttacgaaacagtgtggtggcttctagttgcgcactaccatagttggacaagacaccagcaaccagtgcaggaagactcttgaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50192741 |
accaactgaaagcagtttacgaaacagtgtggtggcttctagttgcgcactaccatagttggacaagacaccagcaaccagtgcaggaagactctcgaac |
50192840 |
T |
|
| Q |
216 |
tacaacaacagttgacaatagaaacagggtttcaataatgcg--aatagcgtataaaagactcagacactcagtagcataagtccaatagactaactaaa |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
50192841 |
tacaacaacagttgacaatagaagcagggtttcaataatgcgaaaataacgtataaaag--------aatcagtagcataagtccaatagactaactaaa |
50192932 |
T |
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