View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19873_low_9 (Length: 319)
Name: NF19873_low_9
Description: NF19873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19873_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 36136136 - 36136435
Alignment:
| Q |
18 |
agtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgatattttgcttgataaattaataaatgtattttctcccattaatgta |
117 |
Q |
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| T |
36136136 |
agtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgatattttgtttgataaattaataaatgtattttctcccattaatgta |
36136235 |
T |
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| Q |
118 |
attttgataaacaaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaa |
217 |
Q |
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| T |
36136236 |
attttgataaacaaaatctccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaa |
36136335 |
T |
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| Q |
218 |
cattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaaatgagaaagtggaccgac |
317 |
Q |
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| T |
36136336 |
cattgcaatacttctgtatcagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaa--gagaaagtggaccgac |
36136433 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 41337746 - 41337843
Alignment:
| Q |
112 |
aatgtaattttgataaacaaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
209 |
Q |
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| T |
41337746 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 41337682 - 41337737
Alignment:
| Q |
18 |
agtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgata |
73 |
Q |
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| T |
41337682 |
agtgtctacagtatattcttaagagcattgatatttttccacttttgagtgtgata |
41337737 |
T |
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