View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_high_10 (Length: 421)
Name: NF19874_high_10
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 51856722 - 51857117
Alignment:
| Q |
15 |
aaattaaactttaatttttcttaacacgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatg |
114 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51856722 |
aaattaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactacatgataatg |
51856821 |
T |
|
| Q |
115 |
aagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51856822 |
aagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattggaacttcaaaataacaacaaatggaaaacataataaagat |
51856921 |
T |
|
| Q |
215 |
tatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttac |
314 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856922 |
tatcatgcaacgcatcgttggatctagaaagcaataaaaag-aattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttac |
51857020 |
T |
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| Q |
315 |
cacttaccaatcaatttcaatcagaaggaaagataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
411 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857021 |
cacttaccaatcgatttcaatcagcaggaaagataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
51857117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 8945766 - 8946112
Alignment:
| Q |
15 |
aaattaaactttaatttttcttaacacgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatg |
114 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8945766 |
aaatcaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactacatgataatg |
8945865 |
T |
|
| Q |
115 |
aagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
214 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8945866 |
aagggtcgttctaaaaatcatttagctccttcacgatgtgctttgaagccgttataattgaaacttcaaaataacaaca-----------taataaagat |
8945954 |
T |
|
| Q |
215 |
tatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945955 |
tatcatgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttac |
8946054 |
T |
|
| Q |
315 |
cacttaccaatcaatttcaatcagaaggaaagataaatttggatatgaaatttttctt |
372 |
Q |
| |
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|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8946055 |
cacttagcaatcgatttcaatcagcaggaaagataaatttggatatgaaatttttctt |
8946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 43262986 - 43263171
Alignment:
| Q |
29 |
tttttcttaacacgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaa |
128 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
43262986 |
ttttttttaacacagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactgcatgatgttgaagggtccttctac |
43263085 |
T |
|
| Q |
129 |
aaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
214 |
Q |
| |
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||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43263086 |
aaatcctttagctcattcacgatgcactttgaagccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
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