View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_high_17 (Length: 346)
Name: NF19874_high_17
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 34333647 - 34333975
Alignment:
| Q |
1 |
atcgtcaaatttctcgtgtgattgcaccctgagcgtttggattactttgaagtggatatgggtgtttagtatagaaataggtcaaaatttaatttggtgt |
100 |
Q |
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| T |
34333647 |
atcgtcaaatttctcgtgtgattgcacccagagcgtttgagttactttgaagtggatatgggtgtttagtatagaaataggtcaaaatttaatttggtgt |
34333746 |
T |
|
| Q |
101 |
cccaatccacaccgtggtcccaaataatcatttttaaaattttattccacggtacataattgagttggtgtccatcaaatgtattatgactttgaatgag |
200 |
Q |
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| T |
34333747 |
cccaatccacaccgtggtcccaaataatcatttttaaaattttattccacggtacataattaaggtggtgtccatcaaatgtattatgactttgaatgag |
34333846 |
T |
|
| Q |
201 |
agtgcttaatgagtccatcaaattcttggggaccttggtgcaatttttggtcaatggaactaaaaagttcataagccagaactatcatttcacgaccatt |
300 |
Q |
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| T |
34333847 |
agtacttaatgagtccatcaaattcttggggaccttggtgcaatttttggtcaatggaactaaaaagttcataagccagaactatcatttcacgaccatt |
34333946 |
T |
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| Q |
301 |
gttgtgttgaaatagttcctaattaatct |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34333947 |
gttgtgttgaaatagttcctaattaatct |
34333975 |
T |
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