View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_high_27 (Length: 258)
Name: NF19874_high_27
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 36380063 - 36379869
Alignment:
| Q |
9 |
cgaagaatatcagaactaacatggaaaaaatagtgactcagccatgatagcaatgccaataaataaaataggatacaatagtctaaatcaagagcagtgc |
108 |
Q |
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| T |
36380063 |
cgaaaaatatcagaactaacatggaaaaaatagtgactcagccatgatagcaatgccaataaataaaataggatacaatagtctaaatcaagagcagtgc |
36379964 |
T |
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| Q |
109 |
gcgtcaaacgctcattcactcgttaaagaacacacgctttatcattagtgccacggcagcttacttttaaaactctataccggatgaccagctct |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36379963 |
gcgtcaaacgctcattcactcgttaaagaacacacgctttatcattagtgccacggcagcttacttttaaaactctataccggataaccagctct |
36379869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 36377180 - 36377120
Alignment:
| Q |
198 |
agctctccccgtttagaaattttaacaattaannnnnnnctttctaagactgaaaaatcca |
258 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36377180 |
agctctcccagtttagaaattttaacaattaatttttctctttctaagactgaaaaatcca |
36377120 |
T |
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