View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_high_33 (Length: 240)
Name: NF19874_high_33
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46730950 - 46731174
Alignment:
| Q |
1 |
gttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttctgagttcatagagtaggattgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46730950 |
gttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttctgagttcatagagtaggattgatt |
46731049 |
T |
|
| Q |
101 |
acgtactgaagtgccagcaggtttatccaaaactacatatgattcctccacggctatgatccttgatctccaatcaatctcatagcacctaaaaatatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731050 |
acgtactgaagtgccagcaggtttatccaaaactacatatgattcctccacggctatgatccttgatctccaatcaatctcatagcacctaaaaatatat |
46731149 |
T |
|
| Q |
201 |
taagaatgtcaaacattatcatatc |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46731150 |
taagaatgtcaaacattatcatatc |
46731174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 7927402 - 7927620
Alignment:
| Q |
6 |
cactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttctgagttcatagagtaggattgattacgta |
105 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||| | |||||||| |||| |||||| ||||| ||||||||||| ||||||| |||||| || |
|
|
| T |
7927402 |
cactgttgactacaatctaaaatttcataacaattctataagtatcctataagggggttaatagctttt-ctgagttcataatgtaggatagattacata |
7927500 |
T |
|
| Q |
106 |
ctgaagtgccagcaggtttatccaaaactacatatgattcctccacggctatgatccttgatctccaatcaatctcatagcacctaaaaatatattaaga |
205 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||| | || | |
|
|
| T |
7927501 |
ctgaagtaccagcaggtttatccaaaacgacgtatgattccttcacagctatgatccttgatctccagtcaatctcataggacctaaaaagaactttcaa |
7927600 |
T |
|
| Q |
206 |
atgtcaaacattatcatatc |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7927601 |
atgtcaaacattatcatatc |
7927620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University