View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_high_39 (Length: 234)
Name: NF19874_high_39
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_39 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 10358447 - 10358677
Alignment:
| Q |
6 |
actaagttaacatgagctggctccaatgattatggtacagggaagaaaaaatattttgattcccatagataaagttgacagcccataggagaaagtatca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10358447 |
actaagttaacatgagctggctccaatgagtatggtacaaggaagaaaaaatattttgattcccatagataaagttgacagcccataggagaaagtatca |
10358546 |
T |
|
| Q |
106 |
aagcttacatcctggcgatgtaggaagctacaatgttgcaacgtatcagatttggtttgttgg--atgcactaaagtgggcccataacatcttgtgctcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
10358547 |
aagcttacatcctggcgatgtaggaagctacaatgctgcaacgtatcagatttggtttgttggatatgcactaaagtgggtccataacatcttgtgcttg |
10358646 |
T |
|
| Q |
204 |
gagaggaagataagggagtctcaaacagtaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10358647 |
gagaggaagataagggagtctcaaacagtaa |
10358677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33189578 - 33189522
Alignment:
| Q |
172 |
cactaaagtgggcccataacatcttgtgctcggagaggaagataagggagtctcaaa |
228 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
33189578 |
cactaaagtgggatcagaacatcttgtgcatggagaggaatataagggagcctcaaa |
33189522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 14919006 - 14918775
Alignment:
| Q |
6 |
actaagttaacatgagctggctccaatgattatggtacagggaagaaaaaatattttgattcccatagataaagttgacagcccataggagaaagtatca |
105 |
Q |
| |
|
|||||||| ||||||||| ||||| || | | ||||| |||||| ||||| |||||||| | ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
14919006 |
actaagtttacatgagctatctccagagaatgtagtacaatgaagaaggaatatgttgattccaagagataaagttgtcagctcatagaagaaagtattg |
14918907 |
T |
|
| Q |
106 |
aagcttacatcctggcgatgtaggaagctacaatgttgcaacgtatcagatttggtttgt--tgg--atgcactaaagtgggcccataacatcttgtgct |
201 |
Q |
| |
|
||| ||||| |||| |||||||||||||||||||||| ||||||||| ||| ||| | ||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
14918906 |
aagaacacatcatggctatgtaggaagctacaatgttgcggcgtatcagacttgatttttactggatatgcactaaagtgggccgagaacatcttgtgct |
14918807 |
T |
|
| Q |
202 |
cggagaggaagataagggagtctcaaacagta |
233 |
Q |
| |
|
||||| ||||||| ||||||||||| |||| |
|
|
| T |
14918806 |
tggagaagaagatacaggagtctcaaatagta |
14918775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 42296898 - 42296836
Alignment:
| Q |
171 |
gcactaaagtgggcccataacatcttgtgctcggagaggaagataagggagtctcaaacagta |
233 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||| ||| |||| |||||||||| |||| |
|
|
| T |
42296898 |
gcactaaactgggcccataacatcttgtgtttggagagaaaggtaagagagtctcaaatagta |
42296836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 18399460 - 18399230
Alignment:
| Q |
6 |
actaagttaacatgagctggctccaatgattatggtacagggaagaaaaaatattttgattcccatagataaagttgacagcccataggagaaagtatca |
105 |
Q |
| |
|
|||||||| ||||||| |||||||| || | | ||||| ||||||| ||||| |||||||| | |||||| | || |||| ||||||||| |||| |
|
|
| T |
18399460 |
actaagtttacatgagttggctccagggaatgtagtacaaggaagaaggaatatgttgattccaagagataaggctgccagctcataggagatagtactg |
18399361 |
T |
|
| Q |
106 |
aagcttacatcctggcgatgtaggaagctacaatgttgcaacgtatcagatttggttt-gttggat--gcactaaagtgggcccataacatcttgtgctc |
202 |
Q |
| |
|
|| ||||| |||||||||||||||||| || |||| ||||| |||| ||||||| ||||||| ||| |||||||||||||||| || |||||| |
|
|
| T |
18399360 |
aacgacacatcatggcgatgtaggaagctataacgttgtgacgtaccagacttggttttgttggatatgcattaaagtgggcccataaggtcatgtgctt |
18399261 |
T |
|
| Q |
203 |
ggagaggaagataagggagtctcaaacagta |
233 |
Q |
| |
|
||| |||||||||| ||||||||||| |||| |
|
|
| T |
18399260 |
ggaaaggaagataatggagtctcaaatagta |
18399230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 32401314 - 32401449
Alignment:
| Q |
89 |
cataggagaaagtatcaaagcttacatcctggcgatgtaggaagctacaatgttgcaacgtatcagatttggtttgttgg--atgcactaaagtgggccc |
186 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||| || ||||||| ||||| | | | ||||| |||||||| || |
|
|
| T |
32401314 |
cataggagaaagtatcaaaggacacaacctcgcgatgtagaaagctacaatgttgcgacatatcagacttggtctaatcgatatgcattaaagtggacca |
32401413 |
T |
|
| Q |
187 |
ataacatcttgtgctcggagaggaagataagggagt |
222 |
Q |
| |
|
| ||| ||||||| | ||||||||||||||||||| |
|
|
| T |
32401414 |
agaacctcttgtgatttgagaggaagataagggagt |
32401449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 35944537 - 35944593
Alignment:
| Q |
169 |
atgcactaaagtgggcccataacatcttgtgctcggagaggaagataagggagtctc |
225 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
35944537 |
atgcactaaagtggacccataacatcttgtgcttggagataaagataagagagtctc |
35944593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 27425103 - 27424985
Alignment:
| Q |
112 |
acatcctggcgatgtaggaagctacaatgttgcaacgtatcagatttggtttgttggat--gcactaaagtgggcccataacatcttgtgctcggagagg |
209 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||| | |||||| | ||||| | ||||| ||| |||||||| |||||| ||||| ||||| |||||| |
|
|
| T |
27425103 |
acatcctagcgatgtagaaagctacaacgttgcgatgtatcatacttggtataatggatatgcagtaaagtggaaccataatatcttatgctctgagagg |
27425004 |
T |
|
| Q |
210 |
aagataagggagtctcaaa |
228 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
27425003 |
aagataagggggtttcaaa |
27424985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University